Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RTL3Q8N8U3 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RTL3Q8N8U3 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.97■□□□□ 0.47
RTL3Q8N8U3 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RTL3Q8N8U3 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RTL3Q8N8U3 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
RTL3Q8N8U3 SIGLEC16-201ENST00000599858 1437 ntBASIC17.97■□□□□ 0.47
RTL3Q8N8U3 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.97■□□□□ 0.47
RTL3Q8N8U3 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 AC046185.3-201ENST00000623228 1824 ntBASIC17.96■□□□□ 0.47
RTL3Q8N8U3 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 AF238378.1-201ENST00000526806 358 ntBASIC17.96■□□□□ 0.47
RTL3Q8N8U3 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 MTDHP3-201ENST00000594186 672 ntBASIC17.96■□□□□ 0.47
RTL3Q8N8U3 AC008608.2-201ENST00000606089 416 ntBASIC17.96■□□□□ 0.47
RTL3Q8N8U3 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 AC079776.2-201ENST00000641154 1609 ntBASIC17.96■□□□□ 0.47
RTL3Q8N8U3 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RTL3Q8N8U3 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
RTL3Q8N8U3 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RTL3Q8N8U3 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.94■□□□□ 0.46
RTL3Q8N8U3 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 AL020989.1-201ENST00000422979 469 ntBASIC17.94■□□□□ 0.46
RTL3Q8N8U3 FGFR3P6-201ENST00000457012 610 ntBASIC17.94■□□□□ 0.46
RTL3Q8N8U3 EMBP1-201ENST00000458200 901 ntBASIC17.94■□□□□ 0.46
RTL3Q8N8U3 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 RN7SL510P-201ENST00000581311 263 ntBASIC17.94■□□□□ 0.46
RTL3Q8N8U3 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 AL691432.3-201ENST00000621860 400 ntBASIC17.94■□□□□ 0.46
RTL3Q8N8U3 AL139288.1-201ENST00000623748 933 ntBASIC17.94■□□□□ 0.46
RTL3Q8N8U3 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RTL3Q8N8U3 AC148477.5-201ENST00000625164 1645 ntBASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms