Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.12■□□□□ 0.33
VRK3Q8IV63 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 AC046185.3-201ENST00000623228 1824 ntBASIC17.12■□□□□ 0.33
VRK3Q8IV63 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VRK3Q8IV63 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
VRK3Q8IV63 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.11■□□□□ 0.33
VRK3Q8IV63 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.11■□□□□ 0.33
VRK3Q8IV63 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
VRK3Q8IV63 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 KLF4P1-201ENST00000412782 1185 ntBASIC17.11■□□□□ 0.33
VRK3Q8IV63 STK19B-204ENST00000512515 211 ntBASIC17.11■□□□□ 0.33
VRK3Q8IV63 AC106795.1-205ENST00000512851 1056 ntBASIC17.11■□□□□ 0.33
VRK3Q8IV63 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.11■□□□□ 0.33
VRK3Q8IV63 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.11■□□□□ 0.33
VRK3Q8IV63 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.11■□□□□ 0.33
VRK3Q8IV63 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
VRK3Q8IV63 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 AC004817.3-201ENST00000602957 2129 ntBASIC17.11■□□□□ 0.33
VRK3Q8IV63 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VRK3Q8IV63 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VRK3Q8IV63 AC009336.1-201ENST00000608941 1553 ntBASIC17.11■□□□□ 0.33
VRK3Q8IV63 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
VRK3Q8IV63 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK3Q8IV63 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VRK3Q8IV63 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK3Q8IV63 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 REXO1L6P-202ENST00000619970 1078 ntBASIC17.1■□□□□ 0.33
VRK3Q8IV63 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VRK3Q8IV63 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK3Q8IV63 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VRK3Q8IV63 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VRK3Q8IV63 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK3Q8IV63 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK3Q8IV63 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK3Q8IV63 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK3Q8IV63 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VRK3Q8IV63 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.1■□□□□ 0.33
VRK3Q8IV63 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.09■□□□□ 0.33
VRK3Q8IV63 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.09■□□□□ 0.33
VRK3Q8IV63 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
VRK3Q8IV63 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 AC003669.1-201ENST00000334569 611 ntBASIC17.09■□□□□ 0.33
VRK3Q8IV63 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms