Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 KRT18P29-201ENST00000397031 1267 ntBASIC15.72■□□□□ 0.11
CCDC58Q4VC31 AL355355.2-201ENST00000442321 338 ntBASIC15.72■□□□□ 0.11
CCDC58Q4VC31 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 PKD1P5-201ENST00000532415 10291 ntBASIC15.72■□□□□ 0.11
CCDC58Q4VC31 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CCDC58Q4VC31 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 AC016396.2-201ENST00000562575 1417 ntBASIC15.71■□□□□ 0.11
CCDC58Q4VC31 REXO1L11P-201ENST00000620964 1927 ntBASIC15.71■□□□□ 0.11
CCDC58Q4VC31 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 RPS2P55-201ENST00000397318 883 ntBASIC15.71■□□□□ 0.11
CCDC58Q4VC31 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 AC012618.2-201ENST00000428058 849 ntBASIC15.71■□□□□ 0.11
CCDC58Q4VC31 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 AC107956.1-201ENST00000494359 873 ntBASIC15.71■□□□□ 0.11
CCDC58Q4VC31 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.71■□□□□ 0.11
CCDC58Q4VC31 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
CCDC58Q4VC31 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CCDC58Q4VC31 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CCDC58Q4VC31 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CCDC58Q4VC31 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC15.7■□□□□ 0.1
CCDC58Q4VC31 AC116562.4-202ENST00000641738 218 ntBASIC15.7■□□□□ 0.1
CCDC58Q4VC31 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CCDC58Q4VC31 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms