Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.78■□□□□ 0.6
VCPP55072 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.78■□□□□ 0.6
VCPP55072 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
VCPP55072 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 KRT18P55-202ENST00000578578 1546 ntBASIC18.78■□□□□ 0.6
VCPP55072 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VCPP55072 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.78■□□□□ 0.6
VCPP55072 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.78■□□□□ 0.6
VCPP55072 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VCPP55072 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VCPP55072 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.77■□□□□ 0.6
VCPP55072 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCPP55072 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.77■□□□□ 0.6
VCPP55072 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCPP55072 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCPP55072 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VCPP55072 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCPP55072 CALY-203ENST00000368558 825 ntTSL 5 BASIC18.77■□□□□ 0.6
VCPP55072 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
VCPP55072 METTL21AP1-201ENST00000438852 635 ntBASIC18.77■□□□□ 0.6
VCPP55072 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18.77■□□□□ 0.6
VCPP55072 AC040169.1-201ENST00000565382 521 ntBASIC18.77■□□□□ 0.6
VCPP55072 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VCPP55072 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCPP55072 AC020916.1-201ENST00000587762 1774 ntBASIC18.77■□□□□ 0.6
VCPP55072 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCPP55072 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCPP55072 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCPP55072 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VCPP55072 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VCPP55072 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VCPP55072 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
VCPP55072 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
VCPP55072 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.76■□□□□ 0.59
VCPP55072 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
VCPP55072 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
VCPP55072 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
VCPP55072 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.76■□□□□ 0.59
VCPP55072 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
VCPP55072 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.76■□□□□ 0.59
VCPP55072 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.76■□□□□ 0.59
VCPP55072 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.76■□□□□ 0.59
VCPP55072 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
VCPP55072 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.76■□□□□ 0.59
VCPP55072 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 MTDHP3-201ENST00000594186 672 ntBASIC18.76■□□□□ 0.59
VCPP55072 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC18.76■□□□□ 0.59
VCPP55072 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
VCPP55072 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.76■□□□□ 0.59
VCPP55072 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VCPP55072 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
VCPP55072 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
VCPP55072 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.75■□□□□ 0.59
VCPP55072 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
VCPP55072 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.75■□□□□ 0.59
VCPP55072 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VCPP55072 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.75■□□□□ 0.59
VCPP55072 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.75■□□□□ 0.59
VCPP55072 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.75■□□□□ 0.59
VCPP55072 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms