Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC20.2■□□□□ 0.82
CTCFP49711 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CTCFP49711 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC20.2■□□□□ 0.82
CTCFP49711 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC20.2■□□□□ 0.82
CTCFP49711 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.2■□□□□ 0.82
CTCFP49711 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.2■□□□□ 0.82
CTCFP49711 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CTCFP49711 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.19■□□□□ 0.82
CTCFP49711 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CTCFP49711 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTCFP49711 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.19■□□□□ 0.82
CTCFP49711 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CTCFP49711 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CTCFP49711 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTCFP49711 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
CTCFP49711 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CTCFP49711 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC20.19■□□□□ 0.82
CTCFP49711 MRPS18AP1-201ENST00000414458 589 ntBASIC20.19■□□□□ 0.82
CTCFP49711 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC20.19■□□□□ 0.82
CTCFP49711 AC241585.1-201ENST00000433527 519 ntBASIC20.19■□□□□ 0.82
CTCFP49711 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC20.19■□□□□ 0.82
CTCFP49711 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC20.19■□□□□ 0.82
CTCFP49711 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC20.19■□□□□ 0.82
CTCFP49711 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.19■□□□□ 0.82
CTCFP49711 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTCFP49711 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC20.19■□□□□ 0.82
CTCFP49711 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTCFP49711 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CTCFP49711 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CTCFP49711 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTCFP49711 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTCFP49711 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CTCFP49711 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.19■□□□□ 0.82
CTCFP49711 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.18■□□□□ 0.82
CTCFP49711 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.18■□□□□ 0.82
CTCFP49711 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CTCFP49711 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
CTCFP49711 PGF-202ENST00000405431 666 ntTSL 5 BASIC20.18■□□□□ 0.82
CTCFP49711 HAUS4P1-201ENST00000406739 1145 ntBASIC20.18■□□□□ 0.82
CTCFP49711 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
CTCFP49711 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC20.18■□□□□ 0.82
CTCFP49711 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC20.18■□□□□ 0.82
CTCFP49711 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC20.18■□□□□ 0.82
CTCFP49711 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 TNXA-203ENST00000507684 2038 ntBASIC20.18■□□□□ 0.82
CTCFP49711 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
CTCFP49711 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.18■□□□□ 0.82
CTCFP49711 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.18■□□□□ 0.82
CTCFP49711 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.18■□□□□ 0.82
CTCFP49711 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.18■□□□□ 0.82
CTCFP49711 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.18■□□□□ 0.82
CTCFP49711 AC138969.3-201ENST00000546612 1459 ntBASIC20.18■□□□□ 0.82
CTCFP49711 AC138932.2-201ENST00000548268 1459 ntBASIC20.18■□□□□ 0.82
CTCFP49711 AC126755.4-201ENST00000549796 1459 ntBASIC20.18■□□□□ 0.82
CTCFP49711 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CTCFP49711 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTCFP49711 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.17■□□□□ 0.82
CTCFP49711 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTCFP49711 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CTCFP49711 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CTCFP49711 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTCFP49711 AL032819.2-201ENST00000624543 2162 ntBASIC20.17■□□□□ 0.82
CTCFP49711 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CTCFP49711 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.17■□□□□ 0.82
CTCFP49711 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.17■□□□□ 0.82
CTCFP49711 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CTCFP49711 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC20.17■□□□□ 0.82
CTCFP49711 HCG4-201ENST00000418983 998 ntBASIC20.17■□□□□ 0.82
CTCFP49711 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
CTCFP49711 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CTCFP49711 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC20.17■□□□□ 0.82
CTCFP49711 PACS1-203ENST00000524815 628 ntTSL 4 BASIC20.17■□□□□ 0.82
CTCFP49711 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC20.17■□□□□ 0.82
CTCFP49711 ARL16-202ENST00000570561 768 ntTSL 2 BASIC20.17■□□□□ 0.82
CTCFP49711 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CTCFP49711 RAB34-224ENST00000636513 888 ntTSL 5 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms