Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.34■□□□□ 0.37
CXCL12P48061 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.34■□□□□ 0.37
CXCL12P48061 AC051619.7-201ENST00000568314 623 ntBASIC17.34■□□□□ 0.37
CXCL12P48061 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.34■□□□□ 0.37
CXCL12P48061 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.34■□□□□ 0.37
CXCL12P48061 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CXCL12P48061 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
CXCL12P48061 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
CXCL12P48061 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CXCL12P48061 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.33■□□□□ 0.37
CXCL12P48061 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.33■□□□□ 0.37
CXCL12P48061 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CXCL12P48061 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CXCL12P48061 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.33■□□□□ 0.37
CXCL12P48061 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.33■□□□□ 0.37
CXCL12P48061 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
CXCL12P48061 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.33■□□□□ 0.37
CXCL12P48061 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
CXCL12P48061 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.33■□□□□ 0.36
CXCL12P48061 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.33■□□□□ 0.36
CXCL12P48061 AC140658.5-201ENST00000438532 169 ntBASIC17.33■□□□□ 0.36
CXCL12P48061 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.33■□□□□ 0.36
CXCL12P48061 RN7SL589P-201ENST00000481268 310 ntBASIC17.33■□□□□ 0.36
CXCL12P48061 AC079140.1-201ENST00000508039 487 ntBASIC17.33■□□□□ 0.36
CXCL12P48061 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.33■□□□□ 0.36
CXCL12P48061 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 AC099522.2-201ENST00000607001 744 ntBASIC17.33■□□□□ 0.36
CXCL12P48061 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.33■□□□□ 0.36
CXCL12P48061 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.33■□□□□ 0.36
CXCL12P48061 AL645728.2-201ENST00000641974 660 ntBASIC17.33■□□□□ 0.36
CXCL12P48061 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.33■□□□□ 0.36
CXCL12P48061 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.33■□□□□ 0.36
CXCL12P48061 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CXCL12P48061 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL12P48061 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.32■□□□□ 0.36
CXCL12P48061 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.32■□□□□ 0.36
CXCL12P48061 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.32■□□□□ 0.36
CXCL12P48061 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.32■□□□□ 0.36
CXCL12P48061 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.32■□□□□ 0.36
CXCL12P48061 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.32■□□□□ 0.36
CXCL12P48061 TFAMP1-201ENST00000412727 736 ntBASIC17.32■□□□□ 0.36
CXCL12P48061 AC002472.2-201ENST00000442739 958 ntBASIC17.32■□□□□ 0.36
CXCL12P48061 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.32■□□□□ 0.36
CXCL12P48061 KLF2P3-201ENST00000451977 1087 ntBASIC17.32■□□□□ 0.36
CXCL12P48061 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.32■□□□□ 0.36
CXCL12P48061 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.32■□□□□ 0.36
CXCL12P48061 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.32■□□□□ 0.36
CXCL12P48061 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.32■□□□□ 0.36
CXCL12P48061 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.32■□□□□ 0.36
CXCL12P48061 AC012645.4-201ENST00000610691 1061 ntBASIC17.32■□□□□ 0.36
CXCL12P48061 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.32■□□□□ 0.36
CXCL12P48061 AP001059.3-201ENST00000619053 235 ntBASIC17.32■□□□□ 0.36
CXCL12P48061 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
CXCL12P48061 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CXCL12P48061 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CXCL12P48061 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
CXCL12P48061 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL12P48061 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.32■□□□□ 0.36
CXCL12P48061 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.31■□□□□ 0.36
CXCL12P48061 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.31■□□□□ 0.36
CXCL12P48061 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.31■□□□□ 0.36
CXCL12P48061 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL12P48061 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms