Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN4P29074 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN4P29074 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.65■□□□□ 0.42
PTPN4P29074 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN4P29074 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
PTPN4P29074 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.64■□□□□ 0.42
PTPN4P29074 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.64■□□□□ 0.42
PTPN4P29074 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
PTPN4P29074 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN4P29074 DOC2GP-204ENST00000639052 2548 ntBASIC17.64■□□□□ 0.41
PTPN4P29074 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN4P29074 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.64■□□□□ 0.41
PTPN4P29074 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN4P29074 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.64■□□□□ 0.41
PTPN4P29074 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN4P29074 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN4P29074 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
PTPN4P29074 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN4P29074 AL645929.1-201ENST00000420084 975 ntBASIC17.64■□□□□ 0.41
PTPN4P29074 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.64■□□□□ 0.41
PTPN4P29074 DUSP5P1-201ENST00000441325 1139 ntBASIC17.64■□□□□ 0.41
PTPN4P29074 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.64■□□□□ 0.41
PTPN4P29074 AC092597.1-201ENST00000487352 616 ntBASIC17.64■□□□□ 0.41
PTPN4P29074 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN4P29074 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN4P29074 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN4P29074 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
PTPN4P29074 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN4P29074 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
PTPN4P29074 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN4P29074 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
PTPN4P29074 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN4P29074 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
PTPN4P29074 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
PTPN4P29074 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN4P29074 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN4P29074 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.63■□□□□ 0.41
PTPN4P29074 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.63■□□□□ 0.41
PTPN4P29074 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
PTPN4P29074 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
PTPN4P29074 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 ATP5G2P1-201ENST00000433580 426 ntBASIC17.63■□□□□ 0.41
PTPN4P29074 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.63■□□□□ 0.41
PTPN4P29074 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.63■□□□□ 0.41
PTPN4P29074 CLEC4GP1-201ENST00000596555 870 ntBASIC17.63■□□□□ 0.41
PTPN4P29074 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
PTPN4P29074 AC133963.1-201ENST00000504166 1679 ntBASIC17.63■□□□□ 0.41
PTPN4P29074 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.63■□□□□ 0.41
PTPN4P29074 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.63■□□□□ 0.41
PTPN4P29074 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PTPN4P29074 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN4P29074 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN4P29074 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
PTPN4P29074 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN4P29074 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN4P29074 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN4P29074 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
PTPN4P29074 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN4P29074 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN4P29074 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN4P29074 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN4P29074 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN4P29074 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN4P29074 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN4P29074 AL450487.1-201ENST00000426799 995 ntBASIC17.62■□□□□ 0.41
PTPN4P29074 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.62■□□□□ 0.41
PTPN4P29074 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
PTPN4P29074 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
PTPN4P29074 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN4P29074 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.62■□□□□ 0.41
PTPN4P29074 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN4P29074 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.62■□□□□ 0.41
PTPN4P29074 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
PTPN4P29074 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN4P29074 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
PTPN4P29074 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN4P29074 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
PTPN4P29074 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
PTPN4P29074 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.61■□□□□ 0.41
PTPN4P29074 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.61■□□□□ 0.41
PTPN4P29074 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms