Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.67■□□□□ 0.9
HMGB1P09429 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HMGB1P09429 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.67■□□□□ 0.9
HMGB1P09429 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 AP001094.4-201ENST00000579008 2176 ntBASIC20.66■□□□□ 0.9
HMGB1P09429 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
HMGB1P09429 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
HMGB1P09429 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.66■□□□□ 0.9
HMGB1P09429 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
HMGB1P09429 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.66■□□□□ 0.9
HMGB1P09429 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.66■□□□□ 0.9
HMGB1P09429 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.66■□□□□ 0.9
HMGB1P09429 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.66■□□□□ 0.9
HMGB1P09429 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.66■□□□□ 0.9
HMGB1P09429 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.66■□□□□ 0.9
HMGB1P09429 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.66■□□□□ 0.9
HMGB1P09429 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.66■□□□□ 0.9
HMGB1P09429 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.66■□□□□ 0.9
HMGB1P09429 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
HMGB1P09429 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.66■□□□□ 0.9
HMGB1P09429 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB1P09429 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB1P09429 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HMGB1P09429 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB1P09429 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HMGB1P09429 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB1P09429 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB1P09429 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
HMGB1P09429 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB1P09429 AC009336.1-201ENST00000608941 1553 ntBASIC20.65■□□□□ 0.9
HMGB1P09429 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB1P09429 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.65■□□□□ 0.9
HMGB1P09429 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB1P09429 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB1P09429 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.65■□□□□ 0.9
HMGB1P09429 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.65■□□□□ 0.9
HMGB1P09429 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
HMGB1P09429 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
HMGB1P09429 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.65■□□□□ 0.9
HMGB1P09429 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB1P09429 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB1P09429 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC20.65■□□□□ 0.9
HMGB1P09429 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
HMGB1P09429 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB1P09429 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.65■□□□□ 0.9
HMGB1P09429 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
HMGB1P09429 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
HMGB1P09429 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
HMGB1P09429 AC132938.5-201ENST00000624980 1813 ntBASIC20.64■□□□□ 0.9
HMGB1P09429 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HMGB1P09429 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
HMGB1P09429 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC20.64■□□□□ 0.9
HMGB1P09429 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.64■□□□□ 0.9
HMGB1P09429 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB1P09429 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB1P09429 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC20.64■□□□□ 0.89
HMGB1P09429 LTB4R2-202ENST00000528054 3092 ntBASIC20.64■□□□□ 0.89
HMGB1P09429 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB1P09429 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB1P09429 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB1P09429 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB1P09429 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.64■□□□□ 0.89
HMGB1P09429 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.64■□□□□ 0.89
HMGB1P09429 STK19B-204ENST00000512515 211 ntBASIC20.64■□□□□ 0.89
HMGB1P09429 COX5A-202ENST00000562233 441 ntTSL 3 BASIC20.64■□□□□ 0.89
HMGB1P09429 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB1P09429 AC093458.2-201ENST00000623150 629 ntBASIC20.64■□□□□ 0.89
HMGB1P09429 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB1P09429 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.64■□□□□ 0.89
HMGB1P09429 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB1P09429 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB1P09429 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
HMGB1P09429 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB1P09429 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB1P09429 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB1P09429 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.63■□□□□ 0.89
HMGB1P09429 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB1P09429 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms