Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RB1P06400 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
RB1P06400 AL512356.2-201ENST00000546955 174 ntBASIC18.42■□□□□ 0.54
RB1P06400 SPDYE9P-201ENST00000570642 692 ntBASIC18.42■□□□□ 0.54
RB1P06400 AL390955.2-201ENST00000603032 514 ntBASIC18.42■□□□□ 0.54
RB1P06400 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.42■□□□□ 0.54
RB1P06400 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.42■□□□□ 0.54
RB1P06400 SPDYE10P-202ENST00000612005 668 ntBASIC18.42■□□□□ 0.54
RB1P06400 SPDYE8P-202ENST00000612377 668 ntBASIC18.42■□□□□ 0.54
RB1P06400 AL136317.3-201ENST00000618497 906 ntBASIC18.42■□□□□ 0.54
RB1P06400 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RB1P06400 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RB1P06400 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RB1P06400 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RB1P06400 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.42■□□□□ 0.54
RB1P06400 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.42■□□□□ 0.54
RB1P06400 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RB1P06400 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RB1P06400 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RB1P06400 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.42■□□□□ 0.54
RB1P06400 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
RB1P06400 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RB1P06400 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
RB1P06400 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RB1P06400 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RB1P06400 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.41■□□□□ 0.54
RB1P06400 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.41■□□□□ 0.54
RB1P06400 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RB1P06400 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RB1P06400 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.41■□□□□ 0.54
RB1P06400 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.41■□□□□ 0.54
RB1P06400 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.41■□□□□ 0.54
RB1P06400 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RB1P06400 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RB1P06400 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RB1P06400 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.41■□□□□ 0.54
RB1P06400 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.41■□□□□ 0.54
RB1P06400 AC140658.5-201ENST00000438532 169 ntBASIC18.41■□□□□ 0.54
RB1P06400 INGX-202ENST00000489074 768 ntBASIC18.41■□□□□ 0.54
RB1P06400 AC069335.1-201ENST00000489972 472 ntBASIC18.41■□□□□ 0.54
RB1P06400 DUX4L27-201ENST00000554796 1261 ntBASIC18.41■□□□□ 0.54
RB1P06400 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.41■□□□□ 0.54
RB1P06400 AL645728.2-201ENST00000641974 660 ntBASIC18.41■□□□□ 0.54
RB1P06400 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RB1P06400 AC120498.9-201ENST00000339021 3867 ntBASIC18.41■□□□□ 0.54
RB1P06400 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.41■□□□□ 0.54
RB1P06400 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RB1P06400 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
RB1P06400 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RB1P06400 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RB1P06400 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
RB1P06400 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
RB1P06400 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RB1P06400 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RB1P06400 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
RB1P06400 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
RB1P06400 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
RB1P06400 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RB1P06400 AC093214.1-201ENST00000511688 1107 ntBASIC18.4■□□□□ 0.54
RB1P06400 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.4■□□□□ 0.54
RB1P06400 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.4■□□□□ 0.54
RB1P06400 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.4■□□□□ 0.54
RB1P06400 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.4■□□□□ 0.54
RB1P06400 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.4■□□□□ 0.54
RB1P06400 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RB1P06400 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.4■□□□□ 0.54
RB1P06400 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RB1P06400 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
RB1P06400 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
RB1P06400 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
RB1P06400 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
RB1P06400 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RB1P06400 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.39■□□□□ 0.53
RB1P06400 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.39■□□□□ 0.53
RB1P06400 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
RB1P06400 BASP1P1-201ENST00000430708 665 ntBASIC18.39■□□□□ 0.53
RB1P06400 AC055876.3-201ENST00000431496 288 ntBASIC18.39■□□□□ 0.53
RB1P06400 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.39■□□□□ 0.53
RB1P06400 AL592309.1-201ENST00000443127 649 ntBASIC18.39■□□□□ 0.53
RB1P06400 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC18.39■□□□□ 0.53
RB1P06400 RN7SL589P-201ENST00000481268 310 ntBASIC18.39■□□□□ 0.53
RB1P06400 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC18.39■□□□□ 0.53
RB1P06400 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.39■□□□□ 0.53
RB1P06400 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.39■□□□□ 0.53
RB1P06400 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.39■□□□□ 0.53
RB1P06400 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.39■□□□□ 0.53
RB1P06400 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RB1P06400 AC099522.2-201ENST00000607001 744 ntBASIC18.39■□□□□ 0.53
RB1P06400 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RB1P06400 AC138649.4-201ENST00000612222 287 ntBASIC18.39■□□□□ 0.53
RB1P06400 AF228730.6-201ENST00000641497 218 ntBASIC18.39■□□□□ 0.53
RB1P06400 AC084121.3-201ENST00000641716 218 ntBASIC18.39■□□□□ 0.53
RB1P06400 AC105233.6-201ENST00000642093 218 ntBASIC18.39■□□□□ 0.53
RB1P06400 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RB1P06400 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.39■□□□□ 0.53
RB1P06400 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RB1P06400 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RB1P06400 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RB1P06400 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RB1P06400 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms