Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 ABHD17AP6-201ENST00000458502 1044 ntBASIC13.21□□□□□ -0.29
HLA-DQA1P01909 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 KLF13-207ENST00000560473 489 ntTSL 3 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 AL121829.2-201ENST00000620908 328 ntBASIC13.21□□□□□ -0.29
HLA-DQA1P01909 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
HLA-DQA1P01909 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HLA-DQA1P01909 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HLA-DQA1P01909 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC13.21□□□□□ -0.3
HLA-DQA1P01909 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
HLA-DQA1P01909 LYSMD4-203ENST00000378904 2122 ntBASIC13.21□□□□□ -0.3
HLA-DQA1P01909 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.21□□□□□ -0.3
HLA-DQA1P01909 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HLA-DQA1P01909 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HLA-DQA1P01909 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 ACE-204ENST00000428043 5120 ntTSL 2 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 MIR149-201ENST00000384879 89 ntBASIC13.2□□□□□ -0.3
HLA-DQA1P01909 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DQA1P01909 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC13.19□□□□□ -0.3
HLA-DQA1P01909 AC024909.3-201ENST00000611513 2257 ntBASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms