Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.33■□□□□ 0.2
PRKNO60260 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
PRKNO60260 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PRKNO60260 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.32■□□□□ 0.2
PRKNO60260 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
PRKNO60260 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.32■□□□□ 0.2
PRKNO60260 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
PRKNO60260 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PRKNO60260 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.32■□□□□ 0.2
PRKNO60260 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
PRKNO60260 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.32■□□□□ 0.2
PRKNO60260 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PRKNO60260 SART3-203ENST00000546611 1184 ntBASIC16.32■□□□□ 0.2
PRKNO60260 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.32■□□□□ 0.2
PRKNO60260 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
PRKNO60260 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 AC148477.8-201ENST00000624298 468 ntBASIC16.32■□□□□ 0.2
PRKNO60260 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.32■□□□□ 0.2
PRKNO60260 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PRKNO60260 PP12613-201ENST00000424958 2230 ntBASIC16.31■□□□□ 0.2
PRKNO60260 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PRKNO60260 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.31■□□□□ 0.2
PRKNO60260 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PRKNO60260 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PRKNO60260 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PRKNO60260 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.31■□□□□ 0.2
PRKNO60260 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.31■□□□□ 0.2
PRKNO60260 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PRKNO60260 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PRKNO60260 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PRKNO60260 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PRKNO60260 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
PRKNO60260 AC103564.2-201ENST00000432853 1299 ntBASIC16.31■□□□□ 0.2
PRKNO60260 FAM197Y8-203ENST00000450145 560 ntBASIC16.31■□□□□ 0.2
PRKNO60260 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.31■□□□□ 0.2
PRKNO60260 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.31■□□□□ 0.2
PRKNO60260 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.31■□□□□ 0.2
PRKNO60260 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PRKNO60260 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
PRKNO60260 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.31■□□□□ 0.2
PRKNO60260 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PRKNO60260 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PRKNO60260 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.31■□□□□ 0.2
PRKNO60260 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PRKNO60260 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PRKNO60260 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PRKNO60260 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
PRKNO60260 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PRKNO60260 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PRKNO60260 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 AL353593.2-201ENST00000602529 1483 ntBASIC16.3■□□□□ 0.2
PRKNO60260 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PRKNO60260 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.3■□□□□ 0.2
PRKNO60260 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PRKNO60260 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PRKNO60260 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.3■□□□□ 0.2
PRKNO60260 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
PRKNO60260 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.3■□□□□ 0.2
PRKNO60260 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.3■□□□□ 0.2
PRKNO60260 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.3■□□□□ 0.2
PRKNO60260 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.3■□□□□ 0.2
PRKNO60260 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PRKNO60260 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.3■□□□□ 0.2
PRKNO60260 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.3■□□□□ 0.2
PRKNO60260 AC073592.5-201ENST00000624854 528 ntBASIC16.3■□□□□ 0.2
PRKNO60260 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms