Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 KRT18P31-201ENST00000506277 1292 ntBASIC17.03■□□□□ 0.32
VPS4AQ9UN37 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 AC012615.1-201ENST00000565797 1299 ntBASIC17.03■□□□□ 0.32
VPS4AQ9UN37 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 AC132938.6-201ENST00000623828 1655 ntBASIC17.03■□□□□ 0.32
VPS4AQ9UN37 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS4AQ9UN37 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4AQ9UN37 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VPS4AQ9UN37 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS4AQ9UN37 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VPS4AQ9UN37 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS4AQ9UN37 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
VPS4AQ9UN37 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
VPS4AQ9UN37 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS4AQ9UN37 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.31
VPS4AQ9UN37 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS4AQ9UN37 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VPS4AQ9UN37 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.02■□□□□ 0.31
VPS4AQ9UN37 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 KRT18P13-201ENST00000400056 1290 ntBASIC17.01■□□□□ 0.31
VPS4AQ9UN37 DRAXINP1-201ENST00000437611 948 ntBASIC17.01■□□□□ 0.31
VPS4AQ9UN37 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 AC106795.1-205ENST00000512851 1056 ntBASIC17.01■□□□□ 0.31
VPS4AQ9UN37 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 AP002469.2-201ENST00000531724 424 ntBASIC17.01■□□□□ 0.31
VPS4AQ9UN37 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 MIR3917-201ENST00000580971 93 ntBASIC17.01■□□□□ 0.31
VPS4AQ9UN37 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 AC120114.3-201ENST00000611923 658 ntBASIC17.01■□□□□ 0.31
VPS4AQ9UN37 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 SIRPAP1-201ENST00000448467 1770 ntBASIC17.01■□□□□ 0.31
VPS4AQ9UN37 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4AQ9UN37 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms