Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 NOP2-220ENST00000545915 630 ntTSL 2 BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 AL158211.3-201ENST00000607385 239 ntBASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 AC107918.2-201ENST00000530817 355 ntBASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZNF541Q9H0D2 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
ZNF541Q9H0D2 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
ZNF541Q9H0D2 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
ZNF541Q9H0D2 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.83■□□□□ 0.92
ZNF541Q9H0D2 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
ZNF541Q9H0D2 TDG-209ENST00000544861 1387 ntTSL 2 BASIC20.83■□□□□ 0.92
ZNF541Q9H0D2 AC129492.6-201ENST00000611383 1305 ntBASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 PPP6R2P1-201ENST00000450880 1275 ntBASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 CD7-202ENST00000578509 925 ntTSL 3 BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 AC116407.2-201ENST00000613639 860 ntBASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 AC025048.6-201ENST00000634326 1161 ntBASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 AKAP8P1-201ENST00000434743 1349 ntBASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ZNF541Q9H0D2 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 MYCLP1-201ENST00000372451 1075 ntBASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 AC097493.3-201ENST00000509725 367 ntBASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 THTPA-204ENST00000554970 569 ntTSL 4 BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 THTPA-206ENST00000556015 535 ntTSL 3 BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 LINC01225-203ENST00000563550 1244 ntBASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 COQ9-214ENST00000567933 882 ntTSL 3 BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 AL359881.2-201ENST00000602973 570 ntBASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 AL645728.2-201ENST00000641974 660 ntBASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
ZNF541Q9H0D2 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 AC092580.3-201ENST00000430932 139 ntBASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 AL512638.1-201ENST00000457493 794 ntBASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC20.8■□□□□ 0.92
ZNF541Q9H0D2 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms