Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.55■□□□□ 0.24
SOX3P41225 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.55■□□□□ 0.24
SOX3P41225 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX3P41225 AD000864.1-201ENST00000624076 2295 ntBASIC16.54■□□□□ 0.24
SOX3P41225 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX3P41225 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SOX3P41225 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SOX3P41225 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 AC141586.5-201ENST00000624546 2050 ntBASIC16.54■□□□□ 0.24
SOX3P41225 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX3P41225 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 TSPY19P-201ENST00000418461 509 ntBASIC16.54■□□□□ 0.24
SOX3P41225 TSPY18P-201ENST00000441642 509 ntBASIC16.54■□□□□ 0.24
SOX3P41225 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX3P41225 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 AL121894.2-201ENST00000602977 491 ntBASIC16.54■□□□□ 0.24
SOX3P41225 AL121772.3-201ENST00000610840 674 ntBASIC16.54■□□□□ 0.24
SOX3P41225 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.54■□□□□ 0.24
SOX3P41225 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SOX3P41225 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.54■□□□□ 0.24
SOX3P41225 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.54■□□□□ 0.24
SOX3P41225 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SOX3P41225 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SOX3P41225 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.54■□□□□ 0.24
SOX3P41225 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.54■□□□□ 0.24
SOX3P41225 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX3P41225 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SOX3P41225 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
SOX3P41225 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SOX3P41225 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX3P41225 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
SOX3P41225 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
SOX3P41225 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.53■□□□□ 0.24
SOX3P41225 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SOX3P41225 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
SOX3P41225 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
SOX3P41225 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.53■□□□□ 0.24
SOX3P41225 NUS1P2-201ENST00000417358 873 ntBASIC16.53■□□□□ 0.24
SOX3P41225 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.53■□□□□ 0.24
SOX3P41225 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX3P41225 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.53■□□□□ 0.24
SOX3P41225 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.53■□□□□ 0.24
SOX3P41225 AC112698.1-201ENST00000510299 916 ntBASIC16.53■□□□□ 0.24
SOX3P41225 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.53■□□□□ 0.24
SOX3P41225 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.53■□□□□ 0.24
SOX3P41225 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.53■□□□□ 0.24
SOX3P41225 AC091304.2-201ENST00000564639 760 ntBASIC16.53■□□□□ 0.24
SOX3P41225 AC111152.3-201ENST00000569699 673 ntBASIC16.53■□□□□ 0.24
SOX3P41225 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SOX3P41225 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.53■□□□□ 0.24
SOX3P41225 AL691432.3-201ENST00000621860 400 ntBASIC16.53■□□□□ 0.24
SOX3P41225 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX3P41225 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.53■□□□□ 0.24
SOX3P41225 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
SOX3P41225 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX3P41225 FLJ13224-201ENST00000313737 1514 ntBASIC16.53■□□□□ 0.24
SOX3P41225 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms