Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DOAP06340 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DOAP06340 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 UPF3AP3-201ENST00000420996 769 ntBASIC20.63■□□□□ 0.89
HLA-DOAP06340 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 AC010327.4-202ENST00000591484 748 ntBASIC20.63■□□□□ 0.89
HLA-DOAP06340 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DOAP06340 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DOAP06340 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DOAP06340 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DOAP06340 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DOAP06340 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DOAP06340 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DOAP06340 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DOAP06340 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DOAP06340 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DOAP06340 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DOAP06340 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DOAP06340 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DOAP06340 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 AC004832.2-201ENST00000426397 482 ntBASIC20.62■□□□□ 0.89
HLA-DOAP06340 PRSS29P-201ENST00000440800 595 ntBASIC20.62■□□□□ 0.89
HLA-DOAP06340 VN2R19P-201ENST00000442399 1052 ntBASIC20.62■□□□□ 0.89
HLA-DOAP06340 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 MIR3687-2-201ENST00000577708 61 ntBASIC20.62■□□□□ 0.89
HLA-DOAP06340 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 MIR3687-1-201ENST00000614492 61 ntBASIC20.62■□□□□ 0.89
HLA-DOAP06340 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DOAP06340 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DOAP06340 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DOAP06340 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DOAP06340 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DOAP06340 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DOAP06340 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DOAP06340 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.62■□□□□ 0.89
HLA-DOAP06340 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.61■□□□□ 0.89
HLA-DOAP06340 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-DOAP06340 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-DOAP06340 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-DOAP06340 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.61■□□□□ 0.89
HLA-DOAP06340 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
HLA-DOAP06340 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-DOAP06340 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-DOAP06340 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-DOAP06340 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.61■□□□□ 0.89
HLA-DOAP06340 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.61■□□□□ 0.89
HLA-DOAP06340 AP002414.1-201ENST00000391405 1147 ntBASIC20.61■□□□□ 0.89
HLA-DOAP06340 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-DOAP06340 AC023274.1-201ENST00000418278 595 ntBASIC20.61■□□□□ 0.89
HLA-DOAP06340 GPX1P2-201ENST00000429271 606 ntBASIC20.61■□□□□ 0.89
HLA-DOAP06340 AC004790.2-201ENST00000623588 572 ntBASIC20.61■□□□□ 0.89
HLA-DOAP06340 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC20.61■□□□□ 0.89
HLA-DOAP06340 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-DOAP06340 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.61■□□□□ 0.89
HLA-DOAP06340 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.61■□□□□ 0.89
HLA-DOAP06340 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-DOAP06340 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.61■□□□□ 0.89
HLA-DOAP06340 REXO1L11P-201ENST00000620964 1927 ntBASIC20.61■□□□□ 0.89
HLA-DOAP06340 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.61■□□□□ 0.89
HLA-DOAP06340 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HLA-DOAP06340 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HLA-DOAP06340 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HLA-DOAP06340 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HLA-DOAP06340 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC20.6■□□□□ 0.89
HLA-DOAP06340 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HLA-DOAP06340 PTCHD3P3-201ENST00000403073 906 ntBASIC20.6■□□□□ 0.89
HLA-DOAP06340 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.6■□□□□ 0.89
HLA-DOAP06340 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.6■□□□□ 0.89
HLA-DOAP06340 ACTG1P4-201ENST00000425123 1122 ntBASIC20.6■□□□□ 0.89
HLA-DOAP06340 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.6■□□□□ 0.89
HLA-DOAP06340 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.6■□□□□ 0.89
HLA-DOAP06340 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.6■□□□□ 0.89
HLA-DOAP06340 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
HLA-DOAP06340 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20.6■□□□□ 0.89
HLA-DOAP06340 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms