Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 UBALD1-205ENST00000590891 2641 ntBASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.23■□□□□ 0.51
ATG4AQ8WYN0 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 RNF126P1-202ENST00000569893 925 ntBASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 AC005332.3-201ENST00000589904 676 ntBASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 HYMAI.1-201ENST00000620949 238 ntBASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 AC006011.2-201ENST00000621313 1158 ntBASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 TNRC18P3-201ENST00000441896 2691 ntBASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 LINC01311-201ENST00000565162 1445 ntBASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ATG4AQ8WYN0 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 AL390719.2-201ENST00000606993 987 ntBASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 AC073912.3-201ENST00000624414 853 ntBASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.21■□□□□ 0.51
ATG4AQ8WYN0 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms