Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC144BQ3MJ40 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 SCARNA2-201ENST00000458748 420 ntBASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 FAM215A-202ENST00000632077 792 ntBASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC144BQ3MJ40 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 DANCR-204ENST00000444958 709 ntTSL 3 BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 RPL13AP23-201ENST00000480739 586 ntBASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 POLD2P1-201ENST00000511220 997 ntBASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 RPL18-209ENST00000550645 463 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 RPL18-214ENST00000552588 559 ntTSL 3 BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 AC141586.5-201ENST00000624546 2050 ntBASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC144BQ3MJ40 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC144BQ3MJ40 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC144BQ3MJ40 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC144BQ3MJ40 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC144BQ3MJ40 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC144BQ3MJ40 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.39■□□□□ 0.86
CCDC144BQ3MJ40 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC144BQ3MJ40 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 AC125634.1-201ENST00000438758 1403 ntBASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC144BQ3MJ40 AC022211.2-201ENST00000585075 2527 ntBASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 LINC01126-201ENST00000623515 1646 ntBASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC144BQ3MJ40 AC011467.2-201ENST00000598425 242 ntBASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms