Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SOX3P41225 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
SOX3P41225 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SOX3P41225 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SOX3P41225 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.57■□□□□ 0.24
SOX3P41225 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SOX3P41225 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.57■□□□□ 0.24
SOX3P41225 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.57■□□□□ 0.24
SOX3P41225 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
SOX3P41225 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SOX3P41225 MINOS1P3-201ENST00000457048 203 ntBASIC16.57■□□□□ 0.24
SOX3P41225 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.57■□□□□ 0.24
SOX3P41225 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.57■□□□□ 0.24
SOX3P41225 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.57■□□□□ 0.24
SOX3P41225 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.57■□□□□ 0.24
SOX3P41225 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SOX3P41225 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
SOX3P41225 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
SOX3P41225 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.56■□□□□ 0.24
SOX3P41225 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SOX3P41225 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.56■□□□□ 0.24
SOX3P41225 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.56■□□□□ 0.24
SOX3P41225 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.56■□□□□ 0.24
SOX3P41225 AL732292.2-201ENST00000609649 430 ntBASIC16.56■□□□□ 0.24
SOX3P41225 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.56■□□□□ 0.24
SOX3P41225 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
SOX3P41225 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.56■□□□□ 0.24
SOX3P41225 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.56■□□□□ 0.24
SOX3P41225 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.56■□□□□ 0.24
SOX3P41225 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SOX3P41225 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.55■□□□□ 0.24
SOX3P41225 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.55■□□□□ 0.24
SOX3P41225 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.55■□□□□ 0.24
SOX3P41225 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.55■□□□□ 0.24
SOX3P41225 AL096828.2-201ENST00000567259 1965 ntBASIC16.55■□□□□ 0.24
SOX3P41225 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
SOX3P41225 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
SOX3P41225 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SOX3P41225 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
SOX3P41225 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.55■□□□□ 0.24
SOX3P41225 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.55■□□□□ 0.24
SOX3P41225 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
SOX3P41225 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.55■□□□□ 0.24
SOX3P41225 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.55■□□□□ 0.24
SOX3P41225 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.55■□□□□ 0.24
SOX3P41225 AC005336.2-201ENST00000593183 939 ntBASIC16.55■□□□□ 0.24
SOX3P41225 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.55■□□□□ 0.24
SOX3P41225 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
SOX3P41225 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
SOX3P41225 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX3P41225 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms