Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
HLA-DMBP28068 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC13.44□□□□□ -0.26
HLA-DMBP28068 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DMBP28068 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
HLA-DMBP28068 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 GUK1-204ENST00000366721 689 ntTSL 3 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 KRT18P65-201ENST00000439811 1286 ntBASIC13.43□□□□□ -0.26
HLA-DMBP28068 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 TEN1-204ENST00000588202 862 ntTSL 3 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
HLA-DMBP28068 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
HLA-DMBP28068 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 MED29-202ENST00000594368 1471 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 FAM8A6P-201ENST00000407496 1135 ntBASIC13.42□□□□□ -0.26
HLA-DMBP28068 SAPCD2P2-201ENST00000431719 1174 ntBASIC13.42□□□□□ -0.26
HLA-DMBP28068 HOMER2P1-201ENST00000455653 964 ntBASIC13.42□□□□□ -0.26
HLA-DMBP28068 AC092597.1-201ENST00000487352 616 ntBASIC13.42□□□□□ -0.26
HLA-DMBP28068 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 CROCCP1-201ENST00000426910 5675 ntBASIC13.42□□□□□ -0.26
HLA-DMBP28068 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 AC011676.5-201ENST00000624864 2660 ntBASIC13.42□□□□□ -0.26
HLA-DMBP28068 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HLA-DMBP28068 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC13.42□□□□□ -0.26
HLA-DMBP28068 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms