Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC18.12■□□□□ 0.49
COL6A3P12111 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
COL6A3P12111 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC18.12■□□□□ 0.49
COL6A3P12111 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.11■□□□□ 0.49
COL6A3P12111 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL6A3P12111 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.11■□□□□ 0.49
COL6A3P12111 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.11■□□□□ 0.49
COL6A3P12111 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
COL6A3P12111 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC18.11■□□□□ 0.49
COL6A3P12111 AL513480.1-201ENST00000451731 511 ntBASIC18.11■□□□□ 0.49
COL6A3P12111 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
COL6A3P12111 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC18.11■□□□□ 0.49
COL6A3P12111 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC18.11■□□□□ 0.49
COL6A3P12111 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
COL6A3P12111 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
COL6A3P12111 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.11■□□□□ 0.49
COL6A3P12111 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL6A3P12111 AL049812.1-201ENST00000432563 2267 ntBASIC18.11■□□□□ 0.49
COL6A3P12111 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 FADS2-212ENST00000522639 360 ntTSL 5 BASIC18.11■□□□□ 0.49
COL6A3P12111 FADS2-215ENST00000574708 385 ntTSL 3 BASIC18.11■□□□□ 0.49
COL6A3P12111 MIR3615-201ENST00000581999 87 ntBASIC18.11■□□□□ 0.49
COL6A3P12111 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.11■□□□□ 0.49
COL6A3P12111 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.11■□□□□ 0.49
COL6A3P12111 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL6A3P12111 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
COL6A3P12111 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.11■□□□□ 0.49
COL6A3P12111 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.11■□□□□ 0.49
COL6A3P12111 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A3P12111 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
COL6A3P12111 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL6A3P12111 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.1■□□□□ 0.49
COL6A3P12111 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A3P12111 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.1■□□□□ 0.49
COL6A3P12111 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.1■□□□□ 0.49
COL6A3P12111 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
COL6A3P12111 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.1■□□□□ 0.49
COL6A3P12111 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.1■□□□□ 0.49
COL6A3P12111 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A3P12111 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A3P12111 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A3P12111 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.1■□□□□ 0.49
COL6A3P12111 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A3P12111 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A3P12111 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.1■□□□□ 0.49
COL6A3P12111 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.1■□□□□ 0.49
COL6A3P12111 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC18.1■□□□□ 0.49
COL6A3P12111 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
COL6A3P12111 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A3P12111 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A3P12111 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A3P12111 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A3P12111 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A3P12111 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC18.1■□□□□ 0.49
COL6A3P12111 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC18.1■□□□□ 0.49
COL6A3P12111 AC011495.1-201ENST00000498085 584 ntBASIC18.1■□□□□ 0.49
COL6A3P12111 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL6A3P12111 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.1■□□□□ 0.49
COL6A3P12111 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
COL6A3P12111 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
COL6A3P12111 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A3P12111 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A3P12111 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
COL6A3P12111 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A3P12111 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A3P12111 LDHBP1-201ENST00000455730 1119 ntBASIC18.09■□□□□ 0.49
COL6A3P12111 EMC4-209ENST00000559421 497 ntTSL 2 BASIC18.09■□□□□ 0.49
COL6A3P12111 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
COL6A3P12111 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A3P12111 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A3P12111 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
COL6A3P12111 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
COL6A3P12111 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A3P12111 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A3P12111 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A3P12111 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A3P12111 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
COL6A3P12111 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC18.09■□□□□ 0.49
COL6A3P12111 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A3P12111 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL6A3P12111 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.08■□□□□ 0.49
COL6A3P12111 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL6A3P12111 MIR346-201ENST00000362234 95 ntBASIC18.08■□□□□ 0.49
COL6A3P12111 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC18.08■□□□□ 0.49
COL6A3P12111 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL6A3P12111 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms