Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.29■□□□□ 0.68
COL6A1P12109 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A1P12109 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COL6A1P12109 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COL6A1P12109 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
COL6A1P12109 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COL6A1P12109 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COL6A1P12109 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.28■□□□□ 0.68
COL6A1P12109 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A1P12109 FAM58DP-201ENST00000428076 619 ntBASIC19.28■□□□□ 0.68
COL6A1P12109 AL513480.1-201ENST00000451731 511 ntBASIC19.28■□□□□ 0.68
COL6A1P12109 KLF2P3-201ENST00000451977 1087 ntBASIC19.28■□□□□ 0.68
COL6A1P12109 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A1P12109 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC19.28■□□□□ 0.68
COL6A1P12109 HFE2-206ENST00000634927 506 ntTSL 4 BASIC19.28■□□□□ 0.68
COL6A1P12109 PHGDH-209ENST00000641074 1780 ntBASIC19.28■□□□□ 0.68
COL6A1P12109 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.28■□□□□ 0.68
COL6A1P12109 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL6A1P12109 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
COL6A1P12109 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A1P12109 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.27■□□□□ 0.68
COL6A1P12109 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A1P12109 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A1P12109 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A1P12109 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
COL6A1P12109 CENPM-205ENST00000404067 905 ntTSL 3 BASIC19.27■□□□□ 0.68
COL6A1P12109 RAC2-204ENST00000406508 893 ntTSL 5 BASIC19.27■□□□□ 0.68
COL6A1P12109 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC19.27■□□□□ 0.68
COL6A1P12109 GPS2P2-201ENST00000430745 888 ntBASIC19.27■□□□□ 0.68
COL6A1P12109 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC19.27■□□□□ 0.68
COL6A1P12109 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC19.27■□□□□ 0.68
COL6A1P12109 AP005018.1-201ENST00000525475 301 ntBASIC19.27■□□□□ 0.68
COL6A1P12109 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A1P12109 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.27■□□□□ 0.68
COL6A1P12109 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC19.27■□□□□ 0.68
COL6A1P12109 LINC02560-201ENST00000596379 459 ntBASIC19.27■□□□□ 0.68
COL6A1P12109 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A1P12109 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A1P12109 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL6A1P12109 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.27■□□□□ 0.67
COL6A1P12109 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.67
COL6A1P12109 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL6A1P12109 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.27■□□□□ 0.67
COL6A1P12109 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
COL6A1P12109 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL6A1P12109 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.27■□□□□ 0.67
COL6A1P12109 AL590787.1-201ENST00000568856 1315 ntBASIC19.26■□□□□ 0.67
COL6A1P12109 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.26■□□□□ 0.67
COL6A1P12109 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.26■□□□□ 0.67
COL6A1P12109 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
COL6A1P12109 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.26■□□□□ 0.67
COL6A1P12109 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A1P12109 RPL30-202ENST00000396070 440 ntTSL 2 BASIC19.26■□□□□ 0.67
COL6A1P12109 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
COL6A1P12109 SPDYE11-202ENST00000450699 704 ntBASIC19.26■□□□□ 0.67
COL6A1P12109 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A1P12109 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.26■□□□□ 0.67
COL6A1P12109 DUX4L17-201ENST00000557360 1267 ntBASIC19.26■□□□□ 0.67
COL6A1P12109 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC19.26■□□□□ 0.67
COL6A1P12109 SPDYE9P-201ENST00000570642 692 ntBASIC19.26■□□□□ 0.67
COL6A1P12109 CECR7-204ENST00000609932 568 ntTSL 2 BASIC19.26■□□□□ 0.67
COL6A1P12109 SPDYE10P-202ENST00000612005 668 ntBASIC19.26■□□□□ 0.67
COL6A1P12109 SPDYE8P-202ENST00000612377 668 ntBASIC19.26■□□□□ 0.67
COL6A1P12109 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A1P12109 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL6A1P12109 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
COL6A1P12109 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.26■□□□□ 0.67
COL6A1P12109 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.25■□□□□ 0.67
COL6A1P12109 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.25■□□□□ 0.67
COL6A1P12109 AC126763.1-201ENST00000552015 2118 ntBASIC19.25■□□□□ 0.67
COL6A1P12109 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
COL6A1P12109 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL6A1P12109 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.25■□□□□ 0.67
COL6A1P12109 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.25■□□□□ 0.67
COL6A1P12109 GRAP-202ENST00000395635 834 ntTSL 2 BASIC19.25■□□□□ 0.67
COL6A1P12109 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
COL6A1P12109 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC19.25■□□□□ 0.67
COL6A1P12109 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
COL6A1P12109 HNRNPA1P40-201ENST00000426371 1278 ntBASIC19.25■□□□□ 0.67
COL6A1P12109 AL592309.1-201ENST00000443127 649 ntBASIC19.25■□□□□ 0.67
COL6A1P12109 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC19.25■□□□□ 0.67
COL6A1P12109 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC19.25■□□□□ 0.67
COL6A1P12109 AC079140.1-201ENST00000508039 487 ntBASIC19.25■□□□□ 0.67
COL6A1P12109 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC19.25■□□□□ 0.67
COL6A1P12109 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms