Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDLRP01130 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.04■□□□□ 0.32
LDLRP01130 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LDLRP01130 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDLRP01130 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.04■□□□□ 0.32
LDLRP01130 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
LDLRP01130 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LDLRP01130 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDLRP01130 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDLRP01130 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.03■□□□□ 0.32
LDLRP01130 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDLRP01130 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LDLRP01130 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDLRP01130 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDLRP01130 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.03■□□□□ 0.32
LDLRP01130 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LDLRP01130 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LDLRP01130 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.03■□□□□ 0.32
LDLRP01130 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LDLRP01130 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.03■□□□□ 0.32
LDLRP01130 AL645929.1-201ENST00000420084 975 ntBASIC17.03■□□□□ 0.32
LDLRP01130 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.03■□□□□ 0.32
LDLRP01130 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LDLRP01130 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDLRP01130 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.03■□□□□ 0.32
LDLRP01130 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.03■□□□□ 0.32
LDLRP01130 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDLRP01130 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDLRP01130 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.03■□□□□ 0.32
LDLRP01130 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.03■□□□□ 0.32
LDLRP01130 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.03■□□□□ 0.32
LDLRP01130 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDLRP01130 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LDLRP01130 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LDLRP01130 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.02■□□□□ 0.32
LDLRP01130 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.02■□□□□ 0.32
LDLRP01130 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDLRP01130 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LDLRP01130 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDLRP01130 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDLRP01130 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.02■□□□□ 0.32
LDLRP01130 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.02■□□□□ 0.32
LDLRP01130 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
LDLRP01130 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LDLRP01130 AL118508.1-201ENST00000613502 2345 ntBASIC17.02■□□□□ 0.32
LDLRP01130 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
LDLRP01130 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDLRP01130 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDLRP01130 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDLRP01130 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDLRP01130 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDLRP01130 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.02■□□□□ 0.32
LDLRP01130 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDLRP01130 AL022342.1-201ENST00000400363 863 ntBASIC17.02■□□□□ 0.32
LDLRP01130 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDLRP01130 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LDLRP01130 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.02■□□□□ 0.32
LDLRP01130 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
LDLRP01130 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
LDLRP01130 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
LDLRP01130 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LDLRP01130 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LDLRP01130 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
LDLRP01130 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.01■□□□□ 0.31
LDLRP01130 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
LDLRP01130 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
LDLRP01130 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
LDLRP01130 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 HBZP1-201ENST00000354915 429 ntBASIC17.01■□□□□ 0.31
LDLRP01130 TSSC2-201ENST00000450217 709 ntBASIC17.01■□□□□ 0.31
LDLRP01130 AC009078.2-202ENST00000463353 338 ntBASIC17.01■□□□□ 0.31
LDLRP01130 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.01■□□□□ 0.31
LDLRP01130 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.01■□□□□ 0.31
LDLRP01130 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
LDLRP01130 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.01■□□□□ 0.31
LDLRP01130 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.01■□□□□ 0.31
LDLRP01130 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.01■□□□□ 0.31
LDLRP01130 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.01■□□□□ 0.31
LDLRP01130 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.01■□□□□ 0.31
LDLRP01130 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.01■□□□□ 0.31
LDLRP01130 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.01■□□□□ 0.31
LDLRP01130 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
LDLRP01130 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
LDLRP01130 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDLRP01130 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms