Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF541Q9H0D2 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF541Q9H0D2 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF541Q9H0D2 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.92■□□□□ 0.94
ZNF541Q9H0D2 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF541Q9H0D2 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF541Q9H0D2 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
ZNF541Q9H0D2 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC20.92■□□□□ 0.94
ZNF541Q9H0D2 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
ZNF541Q9H0D2 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 HLA-V-201ENST00000429037 534 ntBASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 AC140878.1-201ENST00000565277 250 ntBASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 COX11-202ENST00000571584 1108 ntTSL 2 BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 RAB34-224ENST00000636513 888 ntTSL 5 BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 AC008677.1-201ENST00000519230 1561 ntBASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF541Q9H0D2 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 OR8S1-201ENST00000310194 1080 ntBASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.9■□□□□ 0.94
ZNF541Q9H0D2 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
ZNF541Q9H0D2 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.89■□□□□ 0.94
ZNF541Q9H0D2 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 SPCS2P4-201ENST00000436160 681 ntBASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 AC116562.4-201ENST00000641316 2276 ntBASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF541Q9H0D2 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 SPDYE14P-201ENST00000442619 822 ntBASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 AC087163.2-201ENST00000457299 853 ntBASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 AC002558.1-201ENST00000488906 803 ntBASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms