Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 AC134043.2-201ENST00000624206 2238 ntBASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 BX276092.7-203ENST00000637198 1536 ntBASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 AC004870.1-201ENST00000315132 882 ntBASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 EMBP1-201ENST00000458200 901 ntBASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 LETM1P2-201ENST00000597330 2178 ntBASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PTCHD1Q96NR3 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 AC122714.2-201ENST00000502787 707 ntBASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PTCHD1Q96NR3 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms