Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
USP47Q96K76 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
USP47Q96K76 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
USP47Q96K76 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP47Q96K76 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
USP47Q96K76 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
USP47Q96K76 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
USP47Q96K76 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC24.56■■□□□ 1.52
USP47Q96K76 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
USP47Q96K76 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP47Q96K76 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC24.56■■□□□ 1.52
USP47Q96K76 COPE-211ENST00000600932 1144 ntTSL 5 BASIC24.56■■□□□ 1.52
USP47Q96K76 AC023511.2-201ENST00000618803 211 ntBASIC24.56■■□□□ 1.52
USP47Q96K76 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
USP47Q96K76 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC24.56■■□□□ 1.52
USP47Q96K76 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC24.56■■□□□ 1.52
USP47Q96K76 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC24.56■■□□□ 1.52
USP47Q96K76 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP47Q96K76 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC24.56■■□□□ 1.52
USP47Q96K76 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP47Q96K76 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP47Q96K76 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC24.56■■□□□ 1.52
USP47Q96K76 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
USP47Q96K76 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC24.55■■□□□ 1.52
USP47Q96K76 AC073648.2-201ENST00000510116 352 ntBASIC24.55■■□□□ 1.52
USP47Q96K76 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC24.55■■□□□ 1.52
USP47Q96K76 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
USP47Q96K76 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
USP47Q96K76 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC24.55■■□□□ 1.52
USP47Q96K76 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP47Q96K76 TPR-209ENST00000613151 2478 ntTSL 5 BASIC24.55■■□□□ 1.52
USP47Q96K76 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC24.55■■□□□ 1.52
USP47Q96K76 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC24.55■■□□□ 1.52
USP47Q96K76 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP47Q96K76 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP47Q96K76 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP47Q96K76 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP47Q96K76 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
USP47Q96K76 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP47Q96K76 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
USP47Q96K76 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC24.55■■□□□ 1.52
USP47Q96K76 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
USP47Q96K76 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
USP47Q96K76 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC24.55■■□□□ 1.52
USP47Q96K76 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC24.55■■□□□ 1.52
USP47Q96K76 MED22-202ENST00000371999 987 ntTSL 3 BASIC24.54■■□□□ 1.52
USP47Q96K76 SLC25A1P3-201ENST00000395415 828 ntBASIC24.54■■□□□ 1.52
USP47Q96K76 RAB17-203ENST00000409576 466 ntTSL 3 BASIC24.54■■□□□ 1.52
USP47Q96K76 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP47Q96K76 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC24.54■■□□□ 1.52
USP47Q96K76 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP47Q96K76 S100A2-206ENST00000497140 697 ntTSL 2 BASIC24.54■■□□□ 1.52
USP47Q96K76 MOK-208ENST00000519058 917 ntTSL 2 BASIC24.54■■□□□ 1.52
USP47Q96K76 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC24.54■■□□□ 1.52
USP47Q96K76 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC24.54■■□□□ 1.52
USP47Q96K76 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USP47Q96K76 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP47Q96K76 AL135999.2-201ENST00000622438 1686 ntBASIC24.54■■□□□ 1.52
USP47Q96K76 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC24.54■■□□□ 1.52
USP47Q96K76 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USP47Q96K76 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC24.54■■□□□ 1.52
USP47Q96K76 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
USP47Q96K76 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC24.54■■□□□ 1.52
USP47Q96K76 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USP47Q96K76 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC24.54■■□□□ 1.52
USP47Q96K76 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP47Q96K76 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC24.54■■□□□ 1.52
USP47Q96K76 AL022342.1-201ENST00000400363 863 ntBASIC24.54■■□□□ 1.52
USP47Q96K76 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP47Q96K76 RPS2P1-201ENST00000434010 821 ntBASIC24.54■■□□□ 1.52
USP47Q96K76 PRYP5-201ENST00000451909 266 ntBASIC24.54■■□□□ 1.52
USP47Q96K76 RNPS1P1-201ENST00000507437 918 ntBASIC24.54■■□□□ 1.52
USP47Q96K76 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC24.54■■□□□ 1.52
USP47Q96K76 SDCCAG3P1-201ENST00000589292 1150 ntBASIC24.54■■□□□ 1.52
USP47Q96K76 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC24.53■■□□□ 1.52
USP47Q96K76 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC24.53■■□□□ 1.52
USP47Q96K76 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP47Q96K76 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
USP47Q96K76 PCDHB18P-201ENST00000524813 2368 ntBASIC24.53■■□□□ 1.52
USP47Q96K76 GID4-202ENST00000376345 1391 ntTSL 3 BASIC24.53■■□□□ 1.52
USP47Q96K76 AC005332.8-201ENST00000622750 2735 ntBASIC24.53■■□□□ 1.52
USP47Q96K76 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP47Q96K76 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP47Q96K76 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
USP47Q96K76 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC24.53■■□□□ 1.52
USP47Q96K76 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC24.53■■□□□ 1.52
USP47Q96K76 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC24.53■■□□□ 1.52
USP47Q96K76 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
USP47Q96K76 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP47Q96K76 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
USP47Q96K76 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC24.53■■□□□ 1.52
USP47Q96K76 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC24.53■■□□□ 1.52
USP47Q96K76 SIGLEC30P-201ENST00000455569 941 ntBASIC24.53■■□□□ 1.52
USP47Q96K76 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC24.53■■□□□ 1.52
USP47Q96K76 COX5A-202ENST00000562233 441 ntTSL 3 BASIC24.53■■□□□ 1.52
USP47Q96K76 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC24.53■■□□□ 1.52
USP47Q96K76 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC24.53■■□□□ 1.52
USP47Q96K76 AL049840.3-201ENST00000602669 611 ntBASIC24.53■■□□□ 1.52
USP47Q96K76 GPALPP1-207ENST00000611650 899 ntBASIC24.53■■□□□ 1.52
USP47Q96K76 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms