Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.59■□□□□ 0.25
RFX3P48380 AC011498.5-201ENST00000592027 486 ntBASIC16.59■□□□□ 0.25
RFX3P48380 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.59■□□□□ 0.25
RFX3P48380 AL445228.2-201ENST00000605589 952 ntBASIC16.59■□□□□ 0.25
RFX3P48380 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
RFX3P48380 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFX3P48380 AC005332.1-201ENST00000577698 1310 ntBASIC16.59■□□□□ 0.25
RFX3P48380 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
RFX3P48380 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RFX3P48380 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.59■□□□□ 0.25
RFX3P48380 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX3P48380 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
RFX3P48380 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.59■□□□□ 0.25
RFX3P48380 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RFX3P48380 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.59■□□□□ 0.25
RFX3P48380 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
RFX3P48380 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
RFX3P48380 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.59■□□□□ 0.25
RFX3P48380 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
RFX3P48380 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.59■□□□□ 0.25
RFX3P48380 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RFX3P48380 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
RFX3P48380 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
RFX3P48380 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RFX3P48380 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RFX3P48380 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.58■□□□□ 0.25
RFX3P48380 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RFX3P48380 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RFX3P48380 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
RFX3P48380 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
RFX3P48380 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX3P48380 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.58■□□□□ 0.24
RFX3P48380 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.58■□□□□ 0.24
RFX3P48380 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX3P48380 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX3P48380 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.58■□□□□ 0.24
RFX3P48380 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.58■□□□□ 0.24
RFX3P48380 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RFX3P48380 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.58■□□□□ 0.24
RFX3P48380 AC009154.2-201ENST00000621177 724 ntBASIC16.58■□□□□ 0.24
RFX3P48380 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.58■□□□□ 0.24
RFX3P48380 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.58■□□□□ 0.24
RFX3P48380 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX3P48380 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RFX3P48380 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
RFX3P48380 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX3P48380 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
RFX3P48380 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.58■□□□□ 0.24
RFX3P48380 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.58■□□□□ 0.24
RFX3P48380 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
RFX3P48380 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.58■□□□□ 0.24
RFX3P48380 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX3P48380 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX3P48380 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX3P48380 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX3P48380 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
RFX3P48380 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RFX3P48380 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.57■□□□□ 0.24
RFX3P48380 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
RFX3P48380 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
RFX3P48380 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
RFX3P48380 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.57■□□□□ 0.24
RFX3P48380 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
RFX3P48380 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 PCED1CP-201ENST00000419887 785 ntBASIC16.57■□□□□ 0.24
RFX3P48380 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.57■□□□□ 0.24
RFX3P48380 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.57■□□□□ 0.24
RFX3P48380 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.57■□□□□ 0.24
RFX3P48380 IGHV3-41-201ENST00000613121 348 ntBASIC16.57■□□□□ 0.24
RFX3P48380 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX3P48380 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.57■□□□□ 0.24
RFX3P48380 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
RFX3P48380 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.56■□□□□ 0.24
RFX3P48380 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.56■□□□□ 0.24
RFX3P48380 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
RFX3P48380 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.56■□□□□ 0.24
RFX3P48380 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.56■□□□□ 0.24
RFX3P48380 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
RFX3P48380 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
RFX3P48380 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms