Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 AC116562.4-202ENST00000641738 218 ntBASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 AC012618.2-201ENST00000428058 849 ntBASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 AC060834.1-201ENST00000443027 2032 ntBASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCDC28BQ9BUN5 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 KRT8P47-201ENST00000604727 1398 ntBASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 AC005104.2-201ENST00000427818 678 ntBASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 PVRIG2P-201ENST00000435460 978 ntBASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 KRT18P65-201ENST00000439811 1286 ntBASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 MIR4651-201ENST00000582622 73 ntBASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 AC233702.5-201ENST00000584107 538 ntBASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 AC026471.5-201ENST00000615068 467 ntBASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 AC010653.2-201ENST00000623505 997 ntBASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 AL049637.2-201ENST00000641778 930 ntBASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCDC28BQ9BUN5 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.16■□□□□ 0.34
CCDC28BQ9BUN5 AC116353.5-201ENST00000638148 1699 ntBASIC17.16■□□□□ 0.34
CCDC28BQ9BUN5 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC28BQ9BUN5 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC28BQ9BUN5 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms