Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 TMEM261P1-201ENST00000604899 340 ntBASIC18.24■□□□□ 0.51
CDX2Q99626 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.24■□□□□ 0.51
CDX2Q99626 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.24■□□□□ 0.51
CDX2Q99626 RETN-203ENST00000629642 400 ntTSL 5 BASIC18.24■□□□□ 0.51
CDX2Q99626 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX2Q99626 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.24■□□□□ 0.51
CDX2Q99626 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDX2Q99626 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CDX2Q99626 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
CDX2Q99626 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CDX2Q99626 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.24■□□□□ 0.51
CDX2Q99626 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX2Q99626 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.24■□□□□ 0.51
CDX2Q99626 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDX2Q99626 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC18.23■□□□□ 0.51
CDX2Q99626 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.23■□□□□ 0.51
CDX2Q99626 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CDX2Q99626 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CDX2Q99626 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX2Q99626 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX2Q99626 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX2Q99626 AC093677.2-201ENST00000600169 1863 ntBASIC18.23■□□□□ 0.51
CDX2Q99626 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.23■□□□□ 0.51
CDX2Q99626 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.23■□□□□ 0.51
CDX2Q99626 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CDX2Q99626 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
CDX2Q99626 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.23■□□□□ 0.51
CDX2Q99626 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX2Q99626 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CDX2Q99626 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.23■□□□□ 0.51
CDX2Q99626 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.23■□□□□ 0.51
CDX2Q99626 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CDX2Q99626 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.23■□□□□ 0.51
CDX2Q99626 MIR4259-201ENST00000584466 101 ntBASIC18.23■□□□□ 0.51
CDX2Q99626 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.23■□□□□ 0.51
CDX2Q99626 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.23■□□□□ 0.51
CDX2Q99626 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.23■□□□□ 0.51
CDX2Q99626 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX2Q99626 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CDX2Q99626 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX2Q99626 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CDX2Q99626 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CDX2Q99626 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.23■□□□□ 0.51
CDX2Q99626 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CDX2Q99626 AL158211.5-201ENST00000623583 2518 ntBASIC18.22■□□□□ 0.51
CDX2Q99626 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CDX2Q99626 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.22■□□□□ 0.51
CDX2Q99626 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX2Q99626 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX2Q99626 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.22■□□□□ 0.51
CDX2Q99626 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX2Q99626 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.22■□□□□ 0.51
CDX2Q99626 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.22■□□□□ 0.51
CDX2Q99626 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.22■□□□□ 0.51
CDX2Q99626 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC18.22■□□□□ 0.51
CDX2Q99626 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC18.22■□□□□ 0.51
CDX2Q99626 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CDX2Q99626 AC005082.1-201ENST00000413042 2259 ntBASIC18.22■□□□□ 0.51
CDX2Q99626 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CDX2Q99626 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
CDX2Q99626 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CDX2Q99626 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CDX2Q99626 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CDX2Q99626 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.22■□□□□ 0.51
CDX2Q99626 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.22■□□□□ 0.51
CDX2Q99626 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 GMCL1P1-201ENST00000463439 1581 ntBASIC18.21■□□□□ 0.51
CDX2Q99626 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.21■□□□□ 0.51
CDX2Q99626 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.21■□□□□ 0.51
CDX2Q99626 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.21■□□□□ 0.51
CDX2Q99626 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.21■□□□□ 0.51
CDX2Q99626 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.21■□□□□ 0.51
CDX2Q99626 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.21■□□□□ 0.51
CDX2Q99626 IGHV3-52-201ENST00000519770 353 ntBASIC18.21■□□□□ 0.51
CDX2Q99626 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.21■□□□□ 0.51
CDX2Q99626 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.21■□□□□ 0.51
CDX2Q99626 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CDX2Q99626 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.2■□□□□ 0.5
CDX2Q99626 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
CDX2Q99626 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.2■□□□□ 0.5
CDX2Q99626 AC007375.3-201ENST00000600936 2314 ntBASIC18.2■□□□□ 0.5
CDX2Q99626 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms