Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 PI4KAP1-204ENST00000612579 1703 ntBASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 CALY-202ENST00000368555 783 ntTSL 2 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 AC010336.2-201ENST00000564226 506 ntBASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 RAB34-224ENST00000636513 888 ntTSL 5 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 AL049757.1-201ENST00000616842 1596 ntBASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SMC1BQ8NDV3 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 PTPA-220ENST00000436883 532 ntTSL 4 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 AC004890.2-204ENST00000481968 304 ntBASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 AC243562.1-201ENST00000560672 389 ntBASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 AC026150.2-201ENST00000564693 1156 ntBASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SMC1BQ8NDV3 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SMC1BQ8NDV3 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.77■□□□□ 0.91
SMC1BQ8NDV3 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.77■□□□□ 0.91
SMC1BQ8NDV3 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SMC1BQ8NDV3 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 AC241585.1-201ENST00000433527 519 ntBASIC20.76■□□□□ 0.91
SMC1BQ8NDV3 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms