Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.22
DEPDC4Q8N2C3 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
DEPDC4Q8N2C3 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
DEPDC4Q8N2C3 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
DEPDC4Q8N2C3 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
DEPDC4Q8N2C3 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
DEPDC4Q8N2C3 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 NIFKP4-201ENST00000567275 1192 ntBASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
DEPDC4Q8N2C3 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 INGX-201ENST00000359239 846 ntBASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 AP000523.1-201ENST00000398242 1049 ntBASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 AK4P3-201ENST00000418260 669 ntBASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 DUTP2-201ENST00000519164 463 ntBASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 AC140113.3-201ENST00000605663 199 ntBASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
DEPDC4Q8N2C3 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 GPAT2P1-201ENST00000444924 1672 ntBASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.43■□□□□ 0.22
DEPDC4Q8N2C3 AP003041.3-201ENST00000527151 707 ntBASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms