Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 AC026396.1-201ENST00000419388 421 ntBASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 AC111152.3-201ENST00000569699 673 ntBASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 RN7SL510P-201ENST00000581311 263 ntBASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 AC233702.3-201ENST00000578656 1387 ntBASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.26■□□□□ 0.35
PTCHD3Q3KNS1 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 AC138894.3-201ENST00000603787 634 ntBASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTCHD3Q3KNS1 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 PP12613-201ENST00000424958 2230 ntBASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 AC012313.1-201ENST00000593393 3059 ntBASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 AL845331.1-201ENST00000424978 1190 ntBASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 IFNL4P1-201ENST00000607083 540 ntBASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.24■□□□□ 0.35
PTCHD3Q3KNS1 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 HLA-J-201ENST00000462773 1622 ntBASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 AC096633.1-201ENST00000422446 749 ntBASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 AC091607.1-201ENST00000490318 1060 ntBASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.23■□□□□ 0.35
PTCHD3Q3KNS1 Z69720.1-201ENST00000601483 472 ntBASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms