Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH6P52701 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC24.23■■□□□ 1.47
MSH6P52701 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC24.23■■□□□ 1.47
MSH6P52701 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC24.23■■□□□ 1.47
MSH6P52701 AC140658.5-201ENST00000438532 169 ntBASIC24.23■■□□□ 1.47
MSH6P52701 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH6P52701 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC24.23■■□□□ 1.47
MSH6P52701 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC24.23■■□□□ 1.47
MSH6P52701 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC24.23■■□□□ 1.47
MSH6P52701 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC24.23■■□□□ 1.47
MSH6P52701 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC24.23■■□□□ 1.47
MSH6P52701 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH6P52701 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC24.23■■□□□ 1.47
MSH6P52701 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC24.23■■□□□ 1.47
MSH6P52701 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH6P52701 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC24.23■■□□□ 1.47
MSH6P52701 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH6P52701 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
MSH6P52701 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
MSH6P52701 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH6P52701 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC24.22■■□□□ 1.47
MSH6P52701 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
MSH6P52701 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
MSH6P52701 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC24.22■■□□□ 1.47
MSH6P52701 COX5BP8-201ENST00000416911 349 ntBASIC24.22■■□□□ 1.47
MSH6P52701 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC24.22■■□□□ 1.47
MSH6P52701 RBPMS2P1-201ENST00000437762 623 ntBASIC24.22■■□□□ 1.47
MSH6P52701 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
MSH6P52701 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC24.22■■□□□ 1.47
MSH6P52701 SPDYE22P-201ENST00000582158 798 ntBASIC24.22■■□□□ 1.47
MSH6P52701 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC24.22■■□□□ 1.47
MSH6P52701 PC-208ENST00000529047 1607 ntTSL 3 BASIC24.22■■□□□ 1.47
MSH6P52701 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC24.22■■□□□ 1.47
MSH6P52701 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC24.22■■□□□ 1.47
MSH6P52701 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC24.22■■□□□ 1.47
MSH6P52701 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC24.22■■□□□ 1.47
MSH6P52701 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
MSH6P52701 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
MSH6P52701 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
MSH6P52701 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
MSH6P52701 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC24.21■■□□□ 1.47
MSH6P52701 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH6P52701 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC24.21■■□□□ 1.47
MSH6P52701 DUTP2-201ENST00000519164 463 ntBASIC24.21■■□□□ 1.47
MSH6P52701 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC24.21■■□□□ 1.47
MSH6P52701 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC24.21■■□□□ 1.47
MSH6P52701 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC24.21■■□□□ 1.47
MSH6P52701 AC243562.1-201ENST00000560672 389 ntBASIC24.21■■□□□ 1.47
MSH6P52701 AL135744.1-201ENST00000565098 629 ntBASIC24.21■■□□□ 1.47
MSH6P52701 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC24.21■■□□□ 1.47
MSH6P52701 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
MSH6P52701 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH6P52701 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH6P52701 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH6P52701 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
MSH6P52701 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH6P52701 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH6P52701 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC24.21■■□□□ 1.47
MSH6P52701 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
MSH6P52701 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC24.2■■□□□ 1.47
MSH6P52701 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC24.2■■□□□ 1.46
MSH6P52701 NME2P1-201ENST00000426182 414 ntBASIC24.2■■□□□ 1.46
MSH6P52701 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
MSH6P52701 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC24.2■■□□□ 1.46
MSH6P52701 AL596325.1-201ENST00000563991 1082 ntBASIC24.2■■□□□ 1.46
MSH6P52701 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
MSH6P52701 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
MSH6P52701 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC24.2■■□□□ 1.46
MSH6P52701 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC24.2■■□□□ 1.46
MSH6P52701 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC24.2■■□□□ 1.46
MSH6P52701 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
MSH6P52701 PTGES2-AS1-201ENST00000443493 2100 ntBASIC24.2■■□□□ 1.46
MSH6P52701 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC24.2■■□□□ 1.46
MSH6P52701 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
MSH6P52701 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
MSH6P52701 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC24.19■■□□□ 1.46
MSH6P52701 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
MSH6P52701 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC24.19■■□□□ 1.46
MSH6P52701 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC24.19■■□□□ 1.46
MSH6P52701 AL512638.1-201ENST00000457493 794 ntBASIC24.19■■□□□ 1.46
MSH6P52701 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
MSH6P52701 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
MSH6P52701 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
MSH6P52701 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
MSH6P52701 AL590787.1-201ENST00000568856 1315 ntBASIC24.19■■□□□ 1.46
MSH6P52701 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
MSH6P52701 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
MSH6P52701 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
MSH6P52701 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
MSH6P52701 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
MSH6P52701 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
MSH6P52701 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC24.18■■□□□ 1.46
MSH6P52701 RN7SL692P-201ENST00000464677 288 ntBASIC24.18■■□□□ 1.46
MSH6P52701 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC24.18■■□□□ 1.46
MSH6P52701 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
MSH6P52701 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC24.18■■□□□ 1.46
MSH6P52701 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC24.18■■□□□ 1.46
MSH6P52701 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
MSH6P52701 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
MSH6P52701 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms