Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
HOXA1P49639 GPAT2P1-201ENST00000444924 1672 ntBASIC14.69□□□□□ -0.06
HOXA1P49639 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC14.69□□□□□ -0.06
HOXA1P49639 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXA1P49639 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXA1P49639 TK2-204ENST00000525974 1178 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXA1P49639 MNT-208ENST00000575394 606 ntTSL 4 BASIC14.69□□□□□ -0.06
HOXA1P49639 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXA1P49639 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.06
HOXA1P49639 AC008622.2-201ENST00000617006 1229 ntBASIC14.69□□□□□ -0.06
HOXA1P49639 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXA1P49639 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXA1P49639 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXA1P49639 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXA1P49639 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXA1P49639 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXA1P49639 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 TBC1D3P2-202ENST00000577902 1649 ntBASIC14.69□□□□□ -0.06
HOXA1P49639 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXA1P49639 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.69□□□□□ -0.06
HOXA1P49639 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC14.69□□□□□ -0.06
HOXA1P49639 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HOXA1P49639 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXA1P49639 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXA1P49639 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXA1P49639 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.68□□□□□ -0.06
HOXA1P49639 KRT8P50-201ENST00000562022 1438 ntBASIC14.68□□□□□ -0.06
HOXA1P49639 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXA1P49639 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HOXA1P49639 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HOXA1P49639 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXA1P49639 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC14.68□□□□□ -0.06
HOXA1P49639 SLC25A1P4-201ENST00000567977 778 ntBASIC14.68□□□□□ -0.06
HOXA1P49639 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXA1P49639 AP000692.2-201ENST00000608391 879 ntBASIC14.68□□□□□ -0.06
HOXA1P49639 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC14.68□□□□□ -0.06
HOXA1P49639 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC14.68□□□□□ -0.06
HOXA1P49639 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HOXA1P49639 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
HOXA1P49639 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
HOXA1P49639 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
HOXA1P49639 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HOXA1P49639 PHGDH-209ENST00000641074 1780 ntBASIC14.68□□□□□ -0.06
HOXA1P49639 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXA1P49639 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC14.67□□□□□ -0.06
HOXA1P49639 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC14.67□□□□□ -0.06
HOXA1P49639 AC099343.3-201ENST00000605834 2503 ntBASIC14.67□□□□□ -0.06
HOXA1P49639 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.67□□□□□ -0.06
HOXA1P49639 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 MFAP1P1-201ENST00000442257 1255 ntBASIC14.67□□□□□ -0.06
HOXA1P49639 RNF121-214ENST00000533380 870 ntTSL 3 BASIC14.67□□□□□ -0.06
HOXA1P49639 IRX5-204ENST00000560154 879 ntTSL 5 BASIC14.67□□□□□ -0.06
HOXA1P49639 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HOXA1P49639 BANP-227ENST00000626016 2144 ntTSL 2 BASIC14.67□□□□□ -0.06
HOXA1P49639 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
HOXA1P49639 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms