Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NEDD4P46934 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NEDD4P46934 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
NEDD4P46934 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NEDD4P46934 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
NEDD4P46934 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NEDD4P46934 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NEDD4P46934 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
NEDD4P46934 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NEDD4P46934 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.75■□□□□ 0.91
NEDD4P46934 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NEDD4P46934 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NEDD4P46934 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NEDD4P46934 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.75■□□□□ 0.91
NEDD4P46934 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
NEDD4P46934 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.75■□□□□ 0.91
NEDD4P46934 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
NEDD4P46934 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.75■□□□□ 0.91
NEDD4P46934 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NEDD4P46934 STK25P1-201ENST00000585406 838 ntBASIC20.75■□□□□ 0.91
NEDD4P46934 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.75■□□□□ 0.91
NEDD4P46934 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
NEDD4P46934 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.75■□□□□ 0.91
NEDD4P46934 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
NEDD4P46934 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NEDD4P46934 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
NEDD4P46934 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
NEDD4P46934 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
NEDD4P46934 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
NEDD4P46934 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NEDD4P46934 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
NEDD4P46934 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.74■□□□□ 0.91
NEDD4P46934 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NEDD4P46934 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.74■□□□□ 0.91
NEDD4P46934 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
NEDD4P46934 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.74■□□□□ 0.91
NEDD4P46934 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.74■□□□□ 0.91
NEDD4P46934 RBM17P3-201ENST00000417687 1192 ntBASIC20.74■□□□□ 0.91
NEDD4P46934 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NEDD4P46934 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.74■□□□□ 0.91
NEDD4P46934 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC20.74■□□□□ 0.91
NEDD4P46934 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.74■□□□□ 0.91
NEDD4P46934 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
NEDD4P46934 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
NEDD4P46934 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
NEDD4P46934 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.74■□□□□ 0.91
NEDD4P46934 MTDHP3-201ENST00000594186 672 ntBASIC20.74■□□□□ 0.91
NEDD4P46934 LINC01711-201ENST00000598340 967 ntBASIC20.74■□□□□ 0.91
NEDD4P46934 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NEDD4P46934 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
NEDD4P46934 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NEDD4P46934 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.74■□□□□ 0.91
NEDD4P46934 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NEDD4P46934 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
NEDD4P46934 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NEDD4P46934 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NEDD4P46934 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NEDD4P46934 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NEDD4P46934 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.73■□□□□ 0.91
NEDD4P46934 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.73■□□□□ 0.91
NEDD4P46934 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NEDD4P46934 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NEDD4P46934 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.73■□□□□ 0.91
NEDD4P46934 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NEDD4P46934 AC004870.1-201ENST00000315132 882 ntBASIC20.73■□□□□ 0.91
NEDD4P46934 SART3-203ENST00000546611 1184 ntBASIC20.73■□□□□ 0.91
NEDD4P46934 PAM16-208ENST00000573553 722 ntTSL 2 BASIC20.73■□□□□ 0.91
NEDD4P46934 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.73■□□□□ 0.91
NEDD4P46934 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.73■□□□□ 0.91
NEDD4P46934 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NEDD4P46934 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
NEDD4P46934 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.73■□□□□ 0.91
NEDD4P46934 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.72■□□□□ 0.91
NEDD4P46934 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
NEDD4P46934 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NEDD4P46934 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.72■□□□□ 0.91
NEDD4P46934 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
NEDD4P46934 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NEDD4P46934 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.72■□□□□ 0.91
NEDD4P46934 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NEDD4P46934 LYSMD4-203ENST00000378904 2122 ntBASIC20.72■□□□□ 0.91
NEDD4P46934 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
NEDD4P46934 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
NEDD4P46934 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
NEDD4P46934 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
NEDD4P46934 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NEDD4P46934 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NEDD4P46934 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NEDD4P46934 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NEDD4P46934 KLF4P1-201ENST00000412782 1185 ntBASIC20.72■□□□□ 0.91
NEDD4P46934 SPDYE21P-201ENST00000413323 827 ntBASIC20.72■□□□□ 0.91
NEDD4P46934 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.72■□□□□ 0.91
NEDD4P46934 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.72■□□□□ 0.91
NEDD4P46934 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NEDD4P46934 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NEDD4P46934 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.72■□□□□ 0.91
NEDD4P46934 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC20.72■□□□□ 0.91
NEDD4P46934 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.72■□□□□ 0.91
NEDD4P46934 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
NEDD4P46934 AC104692.2-201ENST00000603054 253 ntBASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms