Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CIITAP33076 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.84■□□□□ 0.77
CIITAP33076 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.84■□□□□ 0.77
CIITAP33076 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.84■□□□□ 0.77
CIITAP33076 STK19B-204ENST00000512515 211 ntBASIC19.84■□□□□ 0.77
CIITAP33076 RNA5SP419-201ENST00000515908 135 ntBASIC19.84■□□□□ 0.77
CIITAP33076 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.84■□□□□ 0.77
CIITAP33076 AC025062.2-201ENST00000605477 670 ntBASIC19.84■□□□□ 0.77
CIITAP33076 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CIITAP33076 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.84■□□□□ 0.77
CIITAP33076 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CIITAP33076 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CIITAP33076 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
CIITAP33076 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CIITAP33076 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.84■□□□□ 0.77
CIITAP33076 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
CIITAP33076 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.84■□□□□ 0.77
CIITAP33076 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.83■□□□□ 0.77
CIITAP33076 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CIITAP33076 AC138932.1-201ENST00000534164 6830 ntBASIC19.83■□□□□ 0.77
CIITAP33076 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.83■□□□□ 0.77
CIITAP33076 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.83■□□□□ 0.77
CIITAP33076 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.83■□□□□ 0.77
CIITAP33076 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CIITAP33076 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.83■□□□□ 0.77
CIITAP33076 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.83■□□□□ 0.77
CIITAP33076 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.83■□□□□ 0.77
CIITAP33076 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CIITAP33076 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CIITAP33076 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CIITAP33076 BX005266.1-201ENST00000473402 457 ntBASIC19.83■□□□□ 0.77
CIITAP33076 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CIITAP33076 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.83■□□□□ 0.77
CIITAP33076 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.83■□□□□ 0.77
CIITAP33076 AL662844.1-201ENST00000546340 181 ntBASIC19.83■□□□□ 0.77
CIITAP33076 AC064862.7-201ENST00000604520 867 ntBASIC19.83■□□□□ 0.77
CIITAP33076 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.83■□□□□ 0.77
CIITAP33076 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CIITAP33076 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
CIITAP33076 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CIITAP33076 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CIITAP33076 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
CIITAP33076 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
CIITAP33076 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.82■□□□□ 0.76
CIITAP33076 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CIITAP33076 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.82■□□□□ 0.76
CIITAP33076 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 HNRNPDP1-201ENST00000439535 754 ntBASIC19.82■□□□□ 0.76
CIITAP33076 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.82■□□□□ 0.76
CIITAP33076 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.82■□□□□ 0.76
CIITAP33076 AC148477.8-201ENST00000624298 468 ntBASIC19.82■□□□□ 0.76
CIITAP33076 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CIITAP33076 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CIITAP33076 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC19.82■□□□□ 0.76
CIITAP33076 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.82■□□□□ 0.76
CIITAP33076 AC004817.3-201ENST00000602957 2129 ntBASIC19.82■□□□□ 0.76
CIITAP33076 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.82■□□□□ 0.76
CIITAP33076 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CIITAP33076 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
CIITAP33076 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CIITAP33076 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.81■□□□□ 0.76
CIITAP33076 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CIITAP33076 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.81■□□□□ 0.76
CIITAP33076 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CIITAP33076 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.81■□□□□ 0.76
CIITAP33076 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CIITAP33076 SIGLEC30P-201ENST00000455569 941 ntBASIC19.81■□□□□ 0.76
CIITAP33076 AF186996.4-201ENST00000467186 377 ntBASIC19.81■□□□□ 0.76
CIITAP33076 AC073648.2-201ENST00000510116 352 ntBASIC19.81■□□□□ 0.76
CIITAP33076 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.81■□□□□ 0.76
CIITAP33076 MTDHP4-201ENST00000600287 670 ntBASIC19.81■□□□□ 0.76
CIITAP33076 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.81■□□□□ 0.76
CIITAP33076 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms