Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.75■□□□□ 0.43
PTPN4P29074 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.75■□□□□ 0.43
PTPN4P29074 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.75■□□□□ 0.43
PTPN4P29074 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.75■□□□□ 0.43
PTPN4P29074 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.75■□□□□ 0.43
PTPN4P29074 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
PTPN4P29074 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.75■□□□□ 0.43
PTPN4P29074 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.75■□□□□ 0.43
PTPN4P29074 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.75■□□□□ 0.43
PTPN4P29074 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.75■□□□□ 0.43
PTPN4P29074 AC069148.1-201ENST00000608741 768 ntBASIC17.75■□□□□ 0.43
PTPN4P29074 AC083849.1-201ENST00000615227 514 ntBASIC17.75■□□□□ 0.43
PTPN4P29074 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.75■□□□□ 0.43
PTPN4P29074 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.75■□□□□ 0.43
PTPN4P29074 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.75■□□□□ 0.43
PTPN4P29074 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PTPN4P29074 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.75■□□□□ 0.43
PTPN4P29074 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.75■□□□□ 0.43
PTPN4P29074 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.74■□□□□ 0.43
PTPN4P29074 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.74■□□□□ 0.43
PTPN4P29074 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PTPN4P29074 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.74■□□□□ 0.43
PTPN4P29074 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.74■□□□□ 0.43
PTPN4P29074 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.74■□□□□ 0.43
PTPN4P29074 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.74■□□□□ 0.43
PTPN4P29074 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.74■□□□□ 0.43
PTPN4P29074 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 PCDH8P1-201ENST00000428983 2773 ntBASIC17.74■□□□□ 0.43
PTPN4P29074 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
PTPN4P29074 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.74■□□□□ 0.43
PTPN4P29074 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
PTPN4P29074 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.74■□□□□ 0.43
PTPN4P29074 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.74■□□□□ 0.43
PTPN4P29074 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
PTPN4P29074 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN4P29074 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PTPN4P29074 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.73■□□□□ 0.43
PTPN4P29074 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN4P29074 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
PTPN4P29074 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN4P29074 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN4P29074 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
PTPN4P29074 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PTPN4P29074 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
PTPN4P29074 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.73■□□□□ 0.43
PTPN4P29074 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN4P29074 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN4P29074 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN4P29074 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.73■□□□□ 0.43
PTPN4P29074 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN4P29074 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN4P29074 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.73■□□□□ 0.43
PTPN4P29074 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN4P29074 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.73■□□□□ 0.43
PTPN4P29074 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN4P29074 SPDYE15P-201ENST00000424157 909 ntBASIC17.73■□□□□ 0.43
PTPN4P29074 AC034232.1-201ENST00000506026 1064 ntBASIC17.73■□□□□ 0.43
PTPN4P29074 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.73■□□□□ 0.43
PTPN4P29074 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.73■□□□□ 0.43
PTPN4P29074 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.73■□□□□ 0.43
PTPN4P29074 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.73■□□□□ 0.43
PTPN4P29074 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
PTPN4P29074 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.73■□□□□ 0.43
PTPN4P29074 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN4P29074 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN4P29074 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms