Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC009949.1-201ENST00000623048 1830 ntBASIC16.8■□□□□ 0.28
COL5A1P20908 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL5A1P20908 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL5A1P20908 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.79■□□□□ 0.28
COL5A1P20908 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL5A1P20908 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL5A1P20908 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL5A1P20908 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
COL5A1P20908 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL5A1P20908 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.79■□□□□ 0.28
COL5A1P20908 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
COL5A1P20908 AC244107.1-201ENST00000442033 332 ntBASIC16.79■□□□□ 0.28
COL5A1P20908 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.79■□□□□ 0.28
COL5A1P20908 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL5A1P20908 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.79■□□□□ 0.28
COL5A1P20908 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.79■□□□□ 0.28
COL5A1P20908 AC105339.1-204ENST00000636249 355 ntBASIC16.79■□□□□ 0.28
COL5A1P20908 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL5A1P20908 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL5A1P20908 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
COL5A1P20908 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL5A1P20908 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
COL5A1P20908 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
COL5A1P20908 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL5A1P20908 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL5A1P20908 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.79■□□□□ 0.28
COL5A1P20908 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL5A1P20908 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.78■□□□□ 0.28
COL5A1P20908 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL5A1P20908 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
COL5A1P20908 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
COL5A1P20908 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL5A1P20908 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.78■□□□□ 0.28
COL5A1P20908 AC087163.2-201ENST00000457299 853 ntBASIC16.78■□□□□ 0.28
COL5A1P20908 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL5A1P20908 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL5A1P20908 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
COL5A1P20908 AC004835.2-201ENST00000603762 682 ntBASIC16.78■□□□□ 0.28
COL5A1P20908 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
COL5A1P20908 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.78■□□□□ 0.28
COL5A1P20908 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.78■□□□□ 0.28
COL5A1P20908 AC100803.2-201ENST00000562459 1963 ntBASIC16.78■□□□□ 0.28
COL5A1P20908 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL5A1P20908 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL5A1P20908 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL5A1P20908 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC16.77■□□□□ 0.28
COL5A1P20908 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.77■□□□□ 0.28
COL5A1P20908 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL5A1P20908 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.77■□□□□ 0.28
COL5A1P20908 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL5A1P20908 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.77■□□□□ 0.28
COL5A1P20908 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.77■□□□□ 0.28
COL5A1P20908 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.77■□□□□ 0.28
COL5A1P20908 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL5A1P20908 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL5A1P20908 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.77■□□□□ 0.28
COL5A1P20908 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.77■□□□□ 0.28
COL5A1P20908 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL5A1P20908 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.77■□□□□ 0.28
COL5A1P20908 AC006116.8-202ENST00000587620 1550 ntBASIC16.77■□□□□ 0.27
COL5A1P20908 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL5A1P20908 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL5A1P20908 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.77■□□□□ 0.27
COL5A1P20908 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL5A1P20908 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.77■□□□□ 0.27
COL5A1P20908 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.77■□□□□ 0.27
COL5A1P20908 PAWRP1-201ENST00000451083 565 ntBASIC16.77■□□□□ 0.27
COL5A1P20908 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.77■□□□□ 0.27
COL5A1P20908 AC112191.1-201ENST00000523689 701 ntBASIC16.77■□□□□ 0.27
COL5A1P20908 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
COL5A1P20908 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL5A1P20908 AC015911.4-201ENST00000588022 1070 ntBASIC16.77■□□□□ 0.27
COL5A1P20908 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL5A1P20908 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL5A1P20908 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL5A1P20908 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL5A1P20908 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL5A1P20908 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL5A1P20908 AL627223.1-201ENST00000416693 442 ntBASIC16.76■□□□□ 0.27
COL5A1P20908 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.76■□□□□ 0.27
COL5A1P20908 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.76■□□□□ 0.27
COL5A1P20908 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.76■□□□□ 0.27
COL5A1P20908 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
COL5A1P20908 AL513480.1-201ENST00000451731 511 ntBASIC16.76■□□□□ 0.27
COL5A1P20908 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.76■□□□□ 0.27
COL5A1P20908 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
COL5A1P20908 AC099522.2-201ENST00000607001 744 ntBASIC16.76■□□□□ 0.27
COL5A1P20908 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.76■□□□□ 0.27
COL5A1P20908 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL5A1P20908 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.76■□□□□ 0.27
COL5A1P20908 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL5A1P20908 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL5A1P20908 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL5A1P20908 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.76■□□□□ 0.27
COL5A1P20908 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL5A1P20908 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL5A1P20908 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL5A1P20908 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL5A1P20908 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL5A1P20908 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms