Protein–RNA interactions for Protein: P16410

CTLA4, Cytotoxic T-lymphocyte protein 4, humanhuman

Predictions only

Length 223 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTLA4P16410 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CTLA4P16410 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
CTLA4P16410 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CTLA4P16410 PCDHA12-202ENST00000613593 2588 ntBASIC15.66■□□□□ 0.1
CTLA4P16410 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
CTLA4P16410 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC15.66■□□□□ 0.1
CTLA4P16410 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC15.66■□□□□ 0.1
CTLA4P16410 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC15.66■□□□□ 0.1
CTLA4P16410 DAP-202ENST00000432074 1048 ntTSL 2 BASIC15.66■□□□□ 0.1
CTLA4P16410 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC15.66■□□□□ 0.1
CTLA4P16410 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC15.66■□□□□ 0.1
CTLA4P16410 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC15.66■□□□□ 0.1
CTLA4P16410 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CTLA4P16410 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC15.66■□□□□ 0.1
CTLA4P16410 ARL16-209ENST00000573715 763 ntTSL 3 BASIC15.66■□□□□ 0.1
CTLA4P16410 ARL16-211ENST00000576135 694 ntTSL 3 BASIC15.66■□□□□ 0.1
CTLA4P16410 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC15.66■□□□□ 0.1
CTLA4P16410 NDUFV2-AS1-203ENST00000608008 779 ntBASIC15.66■□□□□ 0.1
CTLA4P16410 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CTLA4P16410 TBC1D3P5-201ENST00000579401 1545 ntBASIC15.66■□□□□ 0.1
CTLA4P16410 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC15.66■□□□□ 0.1
CTLA4P16410 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CTLA4P16410 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CTLA4P16410 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.66■□□□□ 0.1
CTLA4P16410 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CTLA4P16410 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15.65■□□□□ 0.1
CTLA4P16410 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.65■□□□□ 0.1
CTLA4P16410 MED25-212ENST00000618715 1467 ntTSL 5 BASIC15.65■□□□□ 0.1
CTLA4P16410 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
CTLA4P16410 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC15.65■□□□□ 0.1
CTLA4P16410 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CTLA4P16410 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CTLA4P16410 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
CTLA4P16410 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC15.65■□□□□ 0.1
CTLA4P16410 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC15.65■□□□□ 0.1
CTLA4P16410 RN7SL606P-201ENST00000472779 293 ntBASIC15.65■□□□□ 0.1
CTLA4P16410 GUSBP12-201ENST00000513727 720 ntBASIC15.65■□□□□ 0.1
CTLA4P16410 KRT18P21-201ENST00000515767 1272 ntBASIC15.65■□□□□ 0.1
CTLA4P16410 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 AL136038.3-201ENST00000561909 1096 ntBASIC15.65■□□□□ 0.1
CTLA4P16410 AC011498.5-201ENST00000592027 486 ntBASIC15.65■□□□□ 0.1
CTLA4P16410 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC15.65■□□□□ 0.1
CTLA4P16410 AL592071.1-201ENST00000611956 408 ntBASIC15.65■□□□□ 0.1
CTLA4P16410 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.65■□□□□ 0.1
CTLA4P16410 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.65■□□□□ 0.1
CTLA4P16410 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 AC097374.2-201ENST00000618617 1306 ntBASIC15.65■□□□□ 0.1
CTLA4P16410 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 PRORSD1P-202ENST00000563365 2154 ntBASIC15.65■□□□□ 0.1
CTLA4P16410 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CTLA4P16410 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.65■□□□□ 0.1
CTLA4P16410 PC-208ENST00000529047 1607 ntTSL 3 BASIC15.65■□□□□ 0.1
CTLA4P16410 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CTLA4P16410 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC15.65■□□□□ 0.1
CTLA4P16410 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
CTLA4P16410 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CTLA4P16410 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CTLA4P16410 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CTLA4P16410 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.64■□□□□ 0.09
CTLA4P16410 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CTLA4P16410 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
CTLA4P16410 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CTLA4P16410 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC15.64■□□□□ 0.09
CTLA4P16410 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CTLA4P16410 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CTLA4P16410 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CTLA4P16410 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CTLA4P16410 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CTLA4P16410 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CTLA4P16410 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CTLA4P16410 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms