Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
MMP3P08254 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MMP3P08254 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP3P08254 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP3P08254 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
MMP3P08254 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC19.42■□□□□ 0.7
MMP3P08254 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP3P08254 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
MMP3P08254 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
MMP3P08254 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP3P08254 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.42■□□□□ 0.7
MMP3P08254 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP3P08254 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP3P08254 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP3P08254 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
MMP3P08254 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP3P08254 ACTG1P4-201ENST00000425123 1122 ntBASIC19.42■□□□□ 0.7
MMP3P08254 HTR5BP-201ENST00000430851 1154 ntBASIC19.42■□□□□ 0.7
MMP3P08254 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.42■□□□□ 0.7
MMP3P08254 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.42■□□□□ 0.7
MMP3P08254 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.42■□□□□ 0.7
MMP3P08254 PDPK2P-202ENST00000562415 1191 ntBASIC19.42■□□□□ 0.7
MMP3P08254 AC027796.2-201ENST00000575326 344 ntBASIC19.42■□□□□ 0.7
MMP3P08254 MNT-208ENST00000575394 606 ntTSL 4 BASIC19.42■□□□□ 0.7
MMP3P08254 AC004877.2-201ENST00000623941 599 ntBASIC19.42■□□□□ 0.7
MMP3P08254 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP3P08254 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MMP3P08254 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.42■□□□□ 0.7
MMP3P08254 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
MMP3P08254 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.42■□□□□ 0.7
MMP3P08254 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MMP3P08254 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.42■□□□□ 0.7
MMP3P08254 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MMP3P08254 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.41■□□□□ 0.7
MMP3P08254 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MMP3P08254 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MMP3P08254 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.41■□□□□ 0.7
MMP3P08254 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
MMP3P08254 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MMP3P08254 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
MMP3P08254 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.41■□□□□ 0.7
MMP3P08254 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MMP3P08254 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MMP3P08254 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.41■□□□□ 0.7
MMP3P08254 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.41■□□□□ 0.7
MMP3P08254 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.41■□□□□ 0.7
MMP3P08254 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.41■□□□□ 0.7
MMP3P08254 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.41■□□□□ 0.7
MMP3P08254 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MMP3P08254 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MMP3P08254 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.41■□□□□ 0.7
MMP3P08254 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
MMP3P08254 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
MMP3P08254 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MMP3P08254 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MMP3P08254 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
MMP3P08254 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.41■□□□□ 0.7
MMP3P08254 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MMP3P08254 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.4■□□□□ 0.7
MMP3P08254 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MMP3P08254 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MMP3P08254 LBH-203ENST00000404397 543 ntTSL 4 BASIC19.4■□□□□ 0.7
MMP3P08254 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.4■□□□□ 0.7
MMP3P08254 MKNK2P1-201ENST00000437526 628 ntBASIC19.4■□□□□ 0.7
MMP3P08254 KRT19P2-202ENST00000557173 1012 ntBASIC19.4■□□□□ 0.7
MMP3P08254 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.4■□□□□ 0.7
MMP3P08254 AL355385.1-201ENST00000606123 409 ntBASIC19.4■□□□□ 0.7
MMP3P08254 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.4■□□□□ 0.7
MMP3P08254 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MMP3P08254 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
MMP3P08254 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
MMP3P08254 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MMP3P08254 BCAR1-209ENST00000546196 1340 ntBASIC19.4■□□□□ 0.7
MMP3P08254 AL590787.1-201ENST00000568856 1315 ntBASIC19.4■□□□□ 0.7
MMP3P08254 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MMP3P08254 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.4■□□□□ 0.7
MMP3P08254 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MMP3P08254 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.4■□□□□ 0.7
MMP3P08254 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.4■□□□□ 0.7
MMP3P08254 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MMP3P08254 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MMP3P08254 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
MMP3P08254 PI4KAP1-204ENST00000612579 1703 ntBASIC19.39■□□□□ 0.7
MMP3P08254 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
MMP3P08254 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
MMP3P08254 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
MMP3P08254 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP3P08254 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP3P08254 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.39■□□□□ 0.69
MMP3P08254 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP3P08254 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP3P08254 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.39■□□□□ 0.69
MMP3P08254 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP3P08254 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP3P08254 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP3P08254 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MMP3P08254 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.39■□□□□ 0.69
MMP3P08254 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MMP3P08254 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
MMP3P08254 AC254562.1-201ENST00000417586 456 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms