Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.68■□□□□ 0.42
SHOX2O60902 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHOX2O60902 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
SHOX2O60902 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
SHOX2O60902 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHOX2O60902 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
SHOX2O60902 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.67■□□□□ 0.42
SHOX2O60902 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHOX2O60902 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.67■□□□□ 0.42
SHOX2O60902 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHOX2O60902 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHOX2O60902 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.67■□□□□ 0.42
SHOX2O60902 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHOX2O60902 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHOX2O60902 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SHOX2O60902 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.67■□□□□ 0.42
SHOX2O60902 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.67■□□□□ 0.42
SHOX2O60902 AC091390.4-202ENST00000476426 537 ntBASIC17.67■□□□□ 0.42
SHOX2O60902 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SHOX2O60902 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.67■□□□□ 0.42
SHOX2O60902 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SHOX2O60902 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHOX2O60902 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SHOX2O60902 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SHOX2O60902 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHOX2O60902 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
SHOX2O60902 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.67■□□□□ 0.42
SHOX2O60902 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SHOX2O60902 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SHOX2O60902 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHOX2O60902 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.66■□□□□ 0.42
SHOX2O60902 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.66■□□□□ 0.42
SHOX2O60902 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.66■□□□□ 0.42
SHOX2O60902 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.66■□□□□ 0.42
SHOX2O60902 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.66■□□□□ 0.42
SHOX2O60902 GXYLT1P5-201ENST00000614548 1189 ntBASIC17.66■□□□□ 0.42
SHOX2O60902 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.66■□□□□ 0.42
SHOX2O60902 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
SHOX2O60902 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.66■□□□□ 0.42
SHOX2O60902 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
SHOX2O60902 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SHOX2O60902 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.66■□□□□ 0.42
SHOX2O60902 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC17.66■□□□□ 0.42
SHOX2O60902 MTHFR-217ENST00000641820 1569 ntBASIC17.66■□□□□ 0.42
SHOX2O60902 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.66■□□□□ 0.42
SHOX2O60902 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHOX2O60902 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SHOX2O60902 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.65■□□□□ 0.42
SHOX2O60902 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.65■□□□□ 0.42
SHOX2O60902 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.65■□□□□ 0.42
SHOX2O60902 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SHOX2O60902 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
SHOX2O60902 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.65■□□□□ 0.42
SHOX2O60902 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 NBPF21P-201ENST00000425093 1451 ntBASIC17.65■□□□□ 0.42
SHOX2O60902 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SHOX2O60902 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SHOX2O60902 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.65■□□□□ 0.42
SHOX2O60902 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.65■□□□□ 0.42
SHOX2O60902 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.65■□□□□ 0.42
SHOX2O60902 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.65■□□□□ 0.42
SHOX2O60902 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.65■□□□□ 0.42
SHOX2O60902 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.65■□□□□ 0.42
SHOX2O60902 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.65■□□□□ 0.42
SHOX2O60902 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC17.65■□□□□ 0.42
SHOX2O60902 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.65■□□□□ 0.42
SHOX2O60902 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHOX2O60902 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms