Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC30.26■■■□□ 2.44
CCDC88BA6NC98 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC30.26■■■□□ 2.44
CCDC88BA6NC98 AC112191.1-201ENST00000523689 701 ntBASIC30.26■■■□□ 2.44
CCDC88BA6NC98 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC30.26■■■□□ 2.44
CCDC88BA6NC98 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
CCDC88BA6NC98 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC30.26■■■□□ 2.43
CCDC88BA6NC98 AC046185.3-201ENST00000623228 1824 ntBASIC30.26■■■□□ 2.43
CCDC88BA6NC98 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
CCDC88BA6NC98 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC30.26■■■□□ 2.43
CCDC88BA6NC98 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 AC140658.5-201ENST00000438532 169 ntBASIC30.25■■■□□ 2.43
CCDC88BA6NC98 COX20P2-201ENST00000452636 358 ntBASIC30.25■■■□□ 2.43
CCDC88BA6NC98 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 CD99-202ENST00000381180 530 ntTSL 2 BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 AC004449.1-201ENST00000564240 433 ntBASIC30.25■■■□□ 2.43
CCDC88BA6NC98 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC30.25■■■□□ 2.43
CCDC88BA6NC98 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC88BA6NC98 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC88BA6NC98 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC88BA6NC98 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC88BA6NC98 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC30.24■■■□□ 2.43
CCDC88BA6NC98 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC88BA6NC98 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC88BA6NC98 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC30.24■■■□□ 2.43
CCDC88BA6NC98 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC30.24■■■□□ 2.43
CCDC88BA6NC98 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC30.24■■■□□ 2.43
CCDC88BA6NC98 INO80C-206ENST00000586489 594 ntTSL 3 BASIC30.24■■■□□ 2.43
CCDC88BA6NC98 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC30.24■■■□□ 2.43
CCDC88BA6NC98 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC88BA6NC98 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC88BA6NC98 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC88BA6NC98 STK4-201ENST00000372801 2038 ntTSL 2 BASIC30.23■■■□□ 2.43
CCDC88BA6NC98 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC88BA6NC98 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC88BA6NC98 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC30.23■■■□□ 2.43
CCDC88BA6NC98 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC88BA6NC98 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC30.23■■■□□ 2.43
CCDC88BA6NC98 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC88BA6NC98 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC30.23■■■□□ 2.43
CCDC88BA6NC98 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC88BA6NC98 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC30.23■■■□□ 2.43
CCDC88BA6NC98 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC30.23■■■□□ 2.43
CCDC88BA6NC98 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC88BA6NC98 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC30.23■■■□□ 2.43
CCDC88BA6NC98 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CCDC88BA6NC98 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CCDC88BA6NC98 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
CCDC88BA6NC98 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC30.22■■■□□ 2.43
CCDC88BA6NC98 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
CCDC88BA6NC98 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC30.22■■■□□ 2.43
CCDC88BA6NC98 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
CCDC88BA6NC98 KLK8-202ENST00000320838 456 ntTSL 5 BASIC30.22■■■□□ 2.43
CCDC88BA6NC98 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC30.22■■■□□ 2.43
CCDC88BA6NC98 GPS2P2-201ENST00000430745 888 ntBASIC30.22■■■□□ 2.43
CCDC88BA6NC98 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC30.22■■■□□ 2.43
CCDC88BA6NC98 INO80E-210ENST00000567705 880 ntTSL 3 BASIC30.22■■■□□ 2.43
CCDC88BA6NC98 Z92544.3-201ENST00000624747 417 ntBASIC30.22■■■□□ 2.43
CCDC88BA6NC98 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
CCDC88BA6NC98 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CCDC88BA6NC98 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 HARS-203ENST00000431330 1774 ntTSL 2 BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 TIMM8BP1-201ENST00000452384 211 ntBASIC30.21■■■□□ 2.43
CCDC88BA6NC98 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC88BA6NC98 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.43
CCDC88BA6NC98 THTPA-204ENST00000554970 569 ntTSL 4 BASIC30.2■■■□□ 2.43
CCDC88BA6NC98 THTPA-206ENST00000556015 535 ntTSL 3 BASIC30.2■■■□□ 2.43
CCDC88BA6NC98 AC026120.1-201ENST00000611536 926 ntBASIC30.2■■■□□ 2.43
CCDC88BA6NC98 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC30.2■■■□□ 2.43
CCDC88BA6NC98 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC30.2■■■□□ 2.43
CCDC88BA6NC98 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC30.2■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms