Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 MCCD1P2-201ENST00000423228 335 ntBASIC20.74■□□□□ 0.91
DDX4Q9NQI0 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 PRSS29P-201ENST00000440800 595 ntBASIC20.74■□□□□ 0.91
DDX4Q9NQI0 AC004967.1-201ENST00000453589 447 ntBASIC20.74■□□□□ 0.91
DDX4Q9NQI0 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 ALG1L5P-201ENST00000482043 771 ntBASIC20.74■□□□□ 0.91
DDX4Q9NQI0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 MTDHP5-201ENST00000598980 586 ntBASIC20.74■□□□□ 0.91
DDX4Q9NQI0 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 METTL26-205ENST00000397666 726 ntTSL 2 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 COA5-202ENST00000409997 557 ntTSL 4 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.73■□□□□ 0.91
DDX4Q9NQI0 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
DDX4Q9NQI0 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.72■□□□□ 0.91
DDX4Q9NQI0 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 MAL2-202ENST00000531508 892 ntTSL 3 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
DDX4Q9NQI0 AC002310.6-201ENST00000624451 1377 ntBASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms