Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 AC122714.2-201ENST00000502787 707 ntBASIC17.32■□□□□ 0.36
VPS13AQ96RL7 SLC25A39P2-201ENST00000537614 270 ntBASIC17.32■□□□□ 0.36
VPS13AQ96RL7 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 AL592309.1-201ENST00000443127 649 ntBASIC17.31■□□□□ 0.36
VPS13AQ96RL7 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 AL355306.1-201ENST00000415580 579 ntBASIC17.31■□□□□ 0.36
VPS13AQ96RL7 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS13AQ96RL7 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 ACA64.2-201ENST00000459014 129 ntBASIC17.3■□□□□ 0.36
VPS13AQ96RL7 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 AC243562.1-201ENST00000560672 389 ntBASIC17.3■□□□□ 0.36
VPS13AQ96RL7 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS13AQ96RL7 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.29■□□□□ 0.36
VPS13AQ96RL7 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 MIR4525-201ENST00000580000 75 ntBASIC17.29■□□□□ 0.36
VPS13AQ96RL7 AC009949.1-201ENST00000623048 1830 ntBASIC17.29■□□□□ 0.36
VPS13AQ96RL7 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS13AQ96RL7 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms