Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 ENSA-205ENST00000361532 792 ntTSL 2 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 AP000593.1-201ENST00000393668 712 ntBASIC13.4□□□□□ -0.26
AP1S3Q96PC3 DERL1-203ENST00000419562 918 ntTSL 2 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 AL445675.2-201ENST00000620291 557 ntBASIC13.4□□□□□ -0.26
AP1S3Q96PC3 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 AC080080.1-201ENST00000625121 2420 ntBASIC13.4□□□□□ -0.26
AP1S3Q96PC3 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
AP1S3Q96PC3 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
AP1S3Q96PC3 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
AP1S3Q96PC3 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC13.4□□□□□ -0.27
AP1S3Q96PC3 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 AC239809.2-201ENST00000415381 517 ntBASIC13.39□□□□□ -0.27
AP1S3Q96PC3 AC069152.1-201ENST00000438030 544 ntBASIC13.39□□□□□ -0.27
AP1S3Q96PC3 KRT18P41-201ENST00000518924 1277 ntBASIC13.39□□□□□ -0.27
AP1S3Q96PC3 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
AP1S3Q96PC3 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
AP1S3Q96PC3 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.38□□□□□ -0.27
AP1S3Q96PC3 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
AP1S3Q96PC3 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
AP1S3Q96PC3 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC13.38□□□□□ -0.27
AP1S3Q96PC3 NF2-208ENST00000403435 2568 ntTSL 5 BASIC13.38□□□□□ -0.27
AP1S3Q96PC3 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC13.38□□□□□ -0.27
AP1S3Q96PC3 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC13.38□□□□□ -0.27
AP1S3Q96PC3 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC13.38□□□□□ -0.27
AP1S3Q96PC3 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms