Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC40Q4G0X9 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 REXO1L11P-201ENST00000620964 1927 ntBASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 RCN1P1-201ENST00000400413 996 ntBASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 Z83836.1-201ENST00000624605 1642 ntBASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC40Q4G0X9 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 AL138688.1-201ENST00000624851 1594 ntBASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 MTCL1P1-201ENST00000446207 792 ntBASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 RNF126P1-202ENST00000569893 925 ntBASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 AL390719.2-201ENST00000606993 987 ntBASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 AC083849.1-201ENST00000615227 514 ntBASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 LINC01451-201ENST00000623792 534 ntBASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC40Q4G0X9 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 AL023806.1-201ENST00000603994 1649 ntBASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 AL671277.2-201ENST00000458060 996 ntBASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 AC068472.1-201ENST00000474589 881 ntBASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 DUX4L26-201ENST00000489078 1255 ntBASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 LINC01238-205ENST00000567549 1107 ntBASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC40Q4G0X9 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms