Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC14.48□□□□□ -0.09
CDX1P47902 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.48□□□□□ -0.09
CDX1P47902 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CDX1P47902 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CDX1P47902 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.48□□□□□ -0.09
CDX1P47902 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC14.48□□□□□ -0.09
CDX1P47902 HOXB1-202ENST00000577092 1414 ntBASIC14.48□□□□□ -0.09
CDX1P47902 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC14.48□□□□□ -0.09
CDX1P47902 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CDX1P47902 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CDX1P47902 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CDX1P47902 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC14.48□□□□□ -0.09
CDX1P47902 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CDX1P47902 AC008556.1-201ENST00000610908 2040 ntBASIC14.48□□□□□ -0.09
CDX1P47902 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC14.47□□□□□ -0.09
CDX1P47902 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC14.47□□□□□ -0.09
CDX1P47902 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC14.47□□□□□ -0.09
CDX1P47902 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
CDX1P47902 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC14.47□□□□□ -0.09
CDX1P47902 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 DOC2GP-204ENST00000639052 2548 ntBASIC14.47□□□□□ -0.09
CDX1P47902 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC14.47□□□□□ -0.09
CDX1P47902 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC14.47□□□□□ -0.09
CDX1P47902 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC14.47□□□□□ -0.09
CDX1P47902 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC14.47□□□□□ -0.09
CDX1P47902 AL671277.2-201ENST00000458060 996 ntBASIC14.47□□□□□ -0.09
CDX1P47902 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC14.47□□□□□ -0.09
CDX1P47902 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC14.47□□□□□ -0.09
CDX1P47902 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC14.47□□□□□ -0.09
CDX1P47902 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC14.47□□□□□ -0.09
CDX1P47902 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CDX1P47902 AC091076.1-201ENST00000610741 619 ntBASIC14.47□□□□□ -0.09
CDX1P47902 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 AL121956.5-201ENST00000625261 221 ntBASIC14.47□□□□□ -0.09
CDX1P47902 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.47□□□□□ -0.09
CDX1P47902 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC14.47□□□□□ -0.09
CDX1P47902 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.47□□□□□ -0.09
CDX1P47902 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CDX1P47902 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CDX1P47902 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CDX1P47902 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CDX1P47902 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC14.47□□□□□ -0.09
CDX1P47902 AL136379.1-201ENST00000623471 2642 ntBASIC14.46□□□□□ -0.09
CDX1P47902 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.46□□□□□ -0.09
CDX1P47902 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.46□□□□□ -0.09
CDX1P47902 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC14.46□□□□□ -0.09
CDX1P47902 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC14.46□□□□□ -0.09
CDX1P47902 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC14.46□□□□□ -0.09
CDX1P47902 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC14.46□□□□□ -0.09
CDX1P47902 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
CDX1P47902 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CDX1P47902 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 AL121761.2-201ENST00000598007 1648 ntBASIC14.46□□□□□ -0.09
CDX1P47902 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
CDX1P47902 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 DAP-202ENST00000432074 1048 ntTSL 2 BASIC14.46□□□□□ -0.09
CDX1P47902 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC14.46□□□□□ -0.09
CDX1P47902 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC14.46□□□□□ -0.09
CDX1P47902 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC14.46□□□□□ -0.09
CDX1P47902 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 DBP-204ENST00000599385 709 ntTSL 3 BASIC14.46□□□□□ -0.09
CDX1P47902 AC024243.1-201ENST00000609234 778 ntBASIC14.46□□□□□ -0.09
CDX1P47902 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC14.46□□□□□ -0.09
CDX1P47902 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
CDX1P47902 AC068587.9-201ENST00000641814 219 ntBASIC14.46□□□□□ -0.09
CDX1P47902 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC14.46□□□□□ -0.09
CDX1P47902 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC14.46□□□□□ -0.09
CDX1P47902 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CDX1P47902 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
CDX1P47902 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC14.46□□□□□ -0.09
CDX1P47902 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CDX1P47902 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms