Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC117947.1-201ENST00000427448 529 ntBASIC13.5□□□□□ -0.25
HLA-DMBP28068 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 TK1-205ENST00000590862 642 ntTSL 3 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 AC140113.3-201ENST00000605663 199 ntBASIC13.5□□□□□ -0.25
HLA-DMBP28068 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
HLA-DMBP28068 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HLA-DMBP28068 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 ANKRD20A18P-201ENST00000359341 492 ntBASIC13.49□□□□□ -0.25
HLA-DMBP28068 RNF152P1-201ENST00000397754 604 ntBASIC13.49□□□□□ -0.25
HLA-DMBP28068 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 AC092647.4-201ENST00000457211 535 ntBASIC13.49□□□□□ -0.25
HLA-DMBP28068 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 YBX1P2-201ENST00000489612 999 ntBASIC13.49□□□□□ -0.25
HLA-DMBP28068 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 AC079602.3-201ENST00000623931 403 ntBASIC13.49□□□□□ -0.25
HLA-DMBP28068 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC13.49□□□□□ -0.25
HLA-DMBP28068 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HLA-DMBP28068 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
HLA-DMBP28068 REXO1L11P-201ENST00000620964 1927 ntBASIC13.49□□□□□ -0.25
HLA-DMBP28068 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC13.48□□□□□ -0.25
HLA-DMBP28068 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 KRT8P47-201ENST00000604727 1398 ntBASIC13.48□□□□□ -0.25
HLA-DMBP28068 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HLA-DMBP28068 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms