Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CXCL1P09341 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CXCL1P09341 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CXCL1P09341 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.74□□□□□ -0.21
CXCL1P09341 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC13.74□□□□□ -0.21
CXCL1P09341 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC13.73□□□□□ -0.21
CXCL1P09341 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
CXCL1P09341 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC13.73□□□□□ -0.21
CXCL1P09341 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC13.73□□□□□ -0.21
CXCL1P09341 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.73□□□□□ -0.21
CXCL1P09341 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
CXCL1P09341 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 SP100-208ENST00000427101 1922 ntTSL 2 BASIC13.73□□□□□ -0.21
CXCL1P09341 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC13.73□□□□□ -0.21
CXCL1P09341 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 AC026271.2-201ENST00000428091 497 ntBASIC13.73□□□□□ -0.21
CXCL1P09341 POU5F1P3-201ENST00000428824 1078 ntBASIC13.73□□□□□ -0.21
CXCL1P09341 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC13.73□□□□□ -0.21
CXCL1P09341 PRSS44-201ENST00000515154 1146 ntBASIC13.73□□□□□ -0.21
CXCL1P09341 PRKY-204ENST00000533551 1019 ntBASIC13.73□□□□□ -0.21
CXCL1P09341 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 TK2-208ENST00000545043 1120 ntTSL 2 BASIC13.73□□□□□ -0.21
CXCL1P09341 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC13.73□□□□□ -0.21
CXCL1P09341 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC13.73□□□□□ -0.21
CXCL1P09341 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.73□□□□□ -0.21
CXCL1P09341 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
CXCL1P09341 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
CXCL1P09341 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
CXCL1P09341 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
CXCL1P09341 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC13.73□□□□□ -0.21
CXCL1P09341 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
CXCL1P09341 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CXCL1P09341 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
CXCL1P09341 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CXCL1P09341 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
CXCL1P09341 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC13.72□□□□□ -0.21
CXCL1P09341 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CXCL1P09341 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC13.72□□□□□ -0.21
CXCL1P09341 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC13.72□□□□□ -0.21
CXCL1P09341 AL162430.1-201ENST00000480705 870 ntBASIC13.72□□□□□ -0.21
CXCL1P09341 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC13.72□□□□□ -0.21
CXCL1P09341 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC13.72□□□□□ -0.21
CXCL1P09341 AC004264.1-201ENST00000608354 794 ntBASIC13.72□□□□□ -0.21
CXCL1P09341 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC13.72□□□□□ -0.21
CXCL1P09341 AC126177.1-201ENST00000547829 2218 ntBASIC13.72□□□□□ -0.21
CXCL1P09341 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC13.72□□□□□ -0.21
CXCL1P09341 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC13.72□□□□□ -0.21
CXCL1P09341 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC13.72□□□□□ -0.21
CXCL1P09341 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
CXCL1P09341 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.72□□□□□ -0.21
CXCL1P09341 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CXCL1P09341 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC13.71□□□□□ -0.21
CXCL1P09341 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.71□□□□□ -0.21
CXCL1P09341 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.71□□□□□ -0.21
CXCL1P09341 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms