Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
TRIM38O00635 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.81■□□□□ 0.44
TRIM38O00635 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.81■□□□□ 0.44
TRIM38O00635 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM38O00635 BNIP3P18-201ENST00000593976 575 ntBASIC17.81■□□□□ 0.44
TRIM38O00635 AC120114.3-201ENST00000611923 658 ntBASIC17.81■□□□□ 0.44
TRIM38O00635 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM38O00635 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM38O00635 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.81■□□□□ 0.44
TRIM38O00635 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM38O00635 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM38O00635 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM38O00635 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM38O00635 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM38O00635 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM38O00635 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TRIM38O00635 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.81■□□□□ 0.44
TRIM38O00635 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM38O00635 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
TRIM38O00635 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
TRIM38O00635 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TRIM38O00635 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.8■□□□□ 0.44
TRIM38O00635 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TRIM38O00635 POM121L3P-201ENST00000419331 1163 ntBASIC17.8■□□□□ 0.44
TRIM38O00635 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM38O00635 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.8■□□□□ 0.44
TRIM38O00635 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.8■□□□□ 0.44
TRIM38O00635 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM38O00635 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
TRIM38O00635 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TRIM38O00635 BX640515.1-201ENST00000617215 977 ntBASIC17.8■□□□□ 0.44
TRIM38O00635 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TRIM38O00635 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM38O00635 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
TRIM38O00635 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TRIM38O00635 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM38O00635 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM38O00635 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
TRIM38O00635 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM38O00635 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM38O00635 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM38O00635 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.79■□□□□ 0.44
TRIM38O00635 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM38O00635 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM38O00635 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM38O00635 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.79■□□□□ 0.44
TRIM38O00635 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM38O00635 AP000593.1-201ENST00000393668 712 ntBASIC17.79■□□□□ 0.44
TRIM38O00635 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM38O00635 AL590627.1-203ENST00000421194 1026 ntBASIC17.79■□□□□ 0.44
TRIM38O00635 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM38O00635 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM38O00635 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.79■□□□□ 0.44
TRIM38O00635 MIR5100-201ENST00000579544 119 ntBASIC17.79■□□□□ 0.44
TRIM38O00635 GPALPP1-207ENST00000611650 899 ntBASIC17.79■□□□□ 0.44
TRIM38O00635 AC006538.3-201ENST00000612495 578 ntBASIC17.79■□□□□ 0.44
TRIM38O00635 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.79■□□□□ 0.44
TRIM38O00635 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
TRIM38O00635 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
TRIM38O00635 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.79■□□□□ 0.44
TRIM38O00635 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM38O00635 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM38O00635 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.79■□□□□ 0.44
TRIM38O00635 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM38O00635 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM38O00635 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
TRIM38O00635 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM38O00635 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM38O00635 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM38O00635 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM38O00635 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM38O00635 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM38O00635 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TRIM38O00635 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM38O00635 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM38O00635 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM38O00635 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM38O00635 AC099398.1-201ENST00000567919 2776 ntBASIC17.78■□□□□ 0.44
TRIM38O00635 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM38O00635 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
TRIM38O00635 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM38O00635 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms