Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 AC133561.5-201ENST00000635547 218 ntBASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 AL031432.5-201ENST00000641059 760 ntBASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CPSF4LA6NMK7 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
CPSF4LA6NMK7 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CPSF4LA6NMK7 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
CPSF4LA6NMK7 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CPSF4LA6NMK7 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
CPSF4LA6NMK7 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 AP001094.4-201ENST00000579008 2176 ntBASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CPSF4LA6NMK7 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 TSPY12P-201ENST00000421279 868 ntBASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 DDX43P3-201ENST00000441064 443 ntBASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 AC139887.4-201ENST00000607877 719 ntBASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 AC011558.1-201ENST00000623459 338 ntBASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CPSF4LA6NMK7 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CPSF4LA6NMK7 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms